Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RKV27_RS11920 Genome accession   NZ_CP134533
Coordinates   2373129..2373974 (-) Length   281 a.a.
NCBI ID   WP_001566903.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_5844     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2368129..2378974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV27_RS11885 rpsR 2369114..2369356 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  RKV27_RS11890 ssbA 2369408..2369911 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  RKV27_RS11895 rpsF 2369932..2370228 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  RKV27_RS11900 - 2370472..2370663 (+) 192 WP_001052483.1 hypothetical protein -
  RKV27_RS11905 ychF 2370749..2371846 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  RKV27_RS11910 - 2371858..2372061 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  RKV27_RS11915 - 2372091..2372972 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  RKV27_RS11920 spo0J 2373129..2373974 (-) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein Regulator
  RKV27_RS11925 - 2374638..2375741 (+) 1104 WP_000655707.1 PLP-dependent transferase -
  RKV27_RS11930 metC 2375738..2376898 (+) 1161 WP_000175852.1 cystathionine beta-lyase MetC -
  RKV27_RS11935 - 2376867..2378708 (+) 1842 WP_000077317.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32869.88 Da        Isoelectric Point: 10.0091

>NTDB_id=804405 RKV27_RS11920 WP_001566903.1 2373129..2373974(-) (spo0J) [Staphylococcus aureus strain KNIH_5844]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQEDFLRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=804405 RKV27_RS11920 WP_001566903.1 2373129..2373974(-) (spo0J) [Staphylococcus aureus strain KNIH_5844]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGAAGA
TTTTCTAAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.379

92.883

0.384