Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RKV27_RS07770 Genome accession   NZ_CP134533
Coordinates   1537222..1537995 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain KNIH_5844     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1532222..1542995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV27_RS07735 - 1532475..1533245 (-) 771 WP_000473699.1 isoprenyl transferase -
  RKV27_RS07740 frr 1533618..1534172 (-) 555 WP_001280006.1 ribosome recycling factor -
  RKV27_RS07745 pyrH 1534191..1534913 (-) 723 WP_000057330.1 UMP kinase -
  RKV27_RS07750 tsf 1535050..1535931 (-) 882 WP_000201387.1 translation elongation factor Ts -
  RKV27_RS07755 - 1535966..1536079 (-) 114 WP_001789890.1 hypothetical protein -
  RKV27_RS07760 rpsB 1536113..1536880 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  RKV27_RS07765 - 1537079..1537171 (-) 93 WP_031788481.1 hypothetical protein -
  RKV27_RS07770 codY 1537222..1537995 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RKV27_RS07775 hslU 1538020..1539423 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  RKV27_RS07780 hslV 1539489..1540034 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RKV27_RS07785 xerC 1540031..1540927 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  RKV27_RS07790 trmFO 1541344..1542651 (-) 1308 WP_000195258.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=804373 RKV27_RS07770 WP_000055337.1 1537222..1537995(-) (codY) [Staphylococcus aureus strain KNIH_5844]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=804373 RKV27_RS07770 WP_000055337.1 1537222..1537995(-) (codY) [Staphylococcus aureus strain KNIH_5844]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGATAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428