Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   P3U53_RS03860 Genome accession   NZ_CP120189
Coordinates   861352..862068 (-) Length   238 a.a.
NCBI ID   WP_037542586.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog012     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 856352..867068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U53_RS03845 (P3U53_03845) - 857857..858804 (+) 948 WP_014613408.1 LacI family DNA-binding transcriptional regulator -
  P3U53_RS03850 (P3U53_03850) - 858860..860344 (+) 1485 WP_101431572.1 sucrose-6-phosphate hydrolase -
  P3U53_RS03855 (P3U53_03855) - 860348..861292 (+) 945 WP_199576607.1 carbohydrate kinase family protein -
  P3U53_RS03860 (P3U53_03860) agrA 861352..862068 (-) 717 WP_037542586.1 quorum-sensing response regulator AgrA Regulator
  P3U53_RS03865 (P3U53_03865) agrC 862082..863374 (-) 1293 WP_070407747.1 quorum-sensing sensor histidine kinase AgrC -
  P3U53_RS03870 (P3U53_03870) agrD 863398..863535 (-) 138 WP_063278585.1 cyclic lactone autoinducer peptide AgrD -
  P3U53_RS03875 (P3U53_03875) - 863537..864103 (-) 567 WP_014613414.1 accessory gene regulator AgrB -
  P3U53_RS12140 - 864495..864575 (+) 81 WP_110161296.1 delta-lysin family phenol-soluble modulin -
  P3U53_RS03880 (P3U53_03880) - 864860..865663 (-) 804 WP_101458021.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28003.09 Da        Isoelectric Point: 5.0893

>NTDB_id=804373 P3U53_RS03860 WP_037542586.1 861352..862068(-) (agrA) [Staphylococcus pseudintermedius strain Dog012]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=804373 P3U53_RS03860 WP_037542586.1 861352..862068(-) (agrA) [Staphylococcus pseudintermedius strain Dog012]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGTGAACGCATGGTGTCCATTATTGAAAATTATATTATGATTGA
AGAGAAACCGATGGAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCACATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.613

100

0.836