Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P3T97_RS11190 Genome accession   NZ_CP120185
Coordinates   2264387..2265358 (-) Length   323 a.a.
NCBI ID   WP_025905417.1    Uniprot ID   A0AAJ4SJJ8
Organism   Mammaliicoccus sciuri strain Dog013     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2259387..2270358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T97_RS11165 (P3T97_11165) - 2259500..2260021 (+) 522 WP_159315306.1 GrpB family protein -
  P3T97_RS11170 (P3T97_11170) murB 2260091..2261008 (+) 918 WP_025905421.1 UDP-N-acetylmuramate dehydrogenase -
  P3T97_RS11175 (P3T97_11175) - 2261495..2262532 (-) 1038 WP_159315307.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  P3T97_RS11180 (P3T97_11180) - 2262635..2263435 (-) 801 WP_126476667.1 ABC transporter ATP-binding protein -
  P3T97_RS11185 (P3T97_11185) - 2263432..2264397 (-) 966 WP_323714361.1 iron chelate uptake ABC transporter family permease subunit -
  P3T97_RS11190 (P3T97_11190) ceuB 2264387..2265358 (-) 972 WP_025905417.1 ABC transporter permease Machinery gene
  P3T97_RS11195 (P3T97_11195) - 2265485..2265901 (-) 417 WP_025905416.1 FixH family protein -
  P3T97_RS11200 (P3T97_11200) nrdF 2266052..2267023 (-) 972 WP_025905415.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  P3T97_RS11205 (P3T97_11205) nrdE 2267052..2269157 (-) 2106 WP_191836346.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  P3T97_RS11210 (P3T97_11210) nrdI 2269120..2269518 (-) 399 WP_037588716.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35476.97 Da        Isoelectric Point: 10.7243

>NTDB_id=804362 P3T97_RS11190 WP_025905417.1 2264387..2265358(-) (ceuB) [Mammaliicoccus sciuri strain Dog013]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=804362 P3T97_RS11190 WP_025905417.1 2264387..2265358(-) (ceuB) [Mammaliicoccus sciuri strain Dog013]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATATTATTAGTAATTGCAACGTTCTTCTCTATTTTTATAGGTGT
TTCAGAAGTAAAACCTTTACATATATTAAATTTAACTGACGAACAGAAGAACATTTTAGTGTCGAGTAGAATTCCGAGAA
CAGTCAGTATTATTATCTCAGGGAGTTCATTAGCTATTTGTGGACTGATTATGCAACAGTTAACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCGAGATTAGGTATATTAATTTCTCTTATCGCGTTTCCAGAAGCCAATAT
ACTACTTAAATTATTATTTGCTACATTATTAAGCTTATTTGGAACAATGCTATTTATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCGTTAGTTGGTATCATGCTCGGAAACATTGTGTCGAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGTGGTAGATATGAAATTCT
TTACATTAGTATTCCGTTATTGATTTTAGCGTTTATATTTGCGAATCAATTCACGATTGCTGGTATGGGTAAAGATTTCA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATTGGACTTATCATTGCATCAATTATTACAGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGATTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTGAAAAA
TGCATTGCCGCATACAGCAGTATTTGGTGCATTGTTTGTGATGATTTGTGATGTTATTGGAAGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATAGGTGTTATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCTAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502