Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RKV27_RS04740 Genome accession   NZ_CP134533
Coordinates   898411..899151 (+) Length   246 a.a.
NCBI ID   WP_029160280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_5844     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 893411..904151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV27_RS04715 yhaM 893829..894770 (+) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  RKV27_RS04720 - 894891..895853 (-) 963 WP_000782127.1 foldase protein PrsA -
  RKV27_RS04725 - 896058..896615 (-) 558 WP_000477959.1 DUF3267 domain-containing protein -
  RKV27_RS04730 - 897348..897713 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  RKV27_RS04735 - 897855..898277 (-) 423 WP_000004981.1 HIT family protein -
  RKV27_RS04740 pptA 898411..899151 (+) 741 WP_029160280.1 ABC transporter ATP-binding protein EcsA Regulator
  RKV27_RS04745 ecsB 899144..900367 (+) 1224 WP_000551840.1 ABC transporter permease EcsB -
  RKV27_RS04750 traP 900491..900994 (-) 504 WP_000737976.1 signal transduction protein TRAP -
  RKV27_RS04755 - 901157..901267 (+) 111 WP_001790154.1 hypothetical protein -
  RKV27_RS04760 hemE 901257..902294 (+) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  RKV27_RS04765 hemH 902352..903275 (+) 924 WP_000162881.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27735.10 Da        Isoelectric Point: 4.7455

>NTDB_id=804339 RKV27_RS04740 WP_029160280.1 898411..899151(+) (pptA) [Staphylococcus aureus strain KNIH_5844]
MTVKVEQFTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHKQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=804339 RKV27_RS04740 WP_029160280.1 898411..899151(+) (pptA) [Staphylococcus aureus strain KNIH_5844]
ATGACAGTTAAAGTAGAACAGTTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAAACAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545