Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RKV27_RS03555 Genome accession   NZ_CP134533
Coordinates   712432..713148 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   P0A0I7
Organism   Staphylococcus aureus strain KNIH_5844     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 707432..718148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV27_RS03535 - 708524..709474 (+) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -
  RKV27_RS03540 - 709623..711107 (+) 1485 WP_000141430.1 sucrose-6-phosphate hydrolase -
  RKV27_RS03545 - 711104..712063 (+) 960 WP_311163186.1 carbohydrate kinase -
  RKV27_RS03550 - 712251..712360 (-) 110 Protein_696 hypothetical protein -
  RKV27_RS03555 agrA 712432..713148 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  RKV27_RS03560 agrC 713167..714459 (-) 1293 WP_001789596.1 quorum-sensing sensor histidine kinase AgrC -
  RKV27_RS03565 agrD 714484..714624 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  RKV27_RS03570 agrB 714621..715190 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  RKV27_RS03575 hld 715480..715560 (+) 81 WP_000046022.1 delta-hemolysin -
  RKV27_RS03580 - 716160..716945 (-) 786 WP_000867942.1 carbon-nitrogen family hydrolase -
  RKV27_RS03585 - 717306..717932 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=804330 RKV27_RS03555 WP_000688492.1 712432..713148(-) (agrA) [Staphylococcus aureus strain KNIH_5844]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=804330 RKV27_RS03555 WP_000688492.1 712432..713148(-) (agrA) [Staphylococcus aureus strain KNIH_5844]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGCGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3BS1
  PDB 4G4K

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1