Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RKV26_RS09495 Genome accession   NZ_CP134532
Coordinates   1936965..1937705 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_6268     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1931965..1942705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV26_RS09470 hemH 1932842..1933765 (-) 924 WP_000162881.1 ferrochelatase -
  RKV26_RS09475 hemE 1933823..1934860 (-) 1038 WP_154284365.1 uroporphyrinogen decarboxylase -
  RKV26_RS09480 - 1934850..1934936 (-) 87 WP_031875110.1 hypothetical protein -
  RKV26_RS09485 traP 1935122..1935625 (+) 504 WP_154284366.1 signal transduction protein TRAP -
  RKV26_RS09490 ecsB 1935749..1936972 (-) 1224 WP_154284367.1 ABC transporter permease EcsB -
  RKV26_RS09495 pptA 1936965..1937705 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  RKV26_RS09500 - 1937839..1938261 (+) 423 WP_000004981.1 HIT family protein -
  RKV26_RS09505 - 1938403..1938768 (+) 366 WP_154284368.1 YtxH domain-containing protein -
  RKV26_RS09510 - 1939498..1940055 (+) 558 WP_000477954.1 DUF3267 domain-containing protein -
  RKV26_RS09515 - 1940260..1941222 (+) 963 WP_000782119.1 foldase protein PrsA -
  RKV26_RS09520 yhaM 1941343..1942284 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=804300 RKV26_RS09495 WP_000216874.1 1936965..1937705(-) (pptA) [Staphylococcus aureus strain KNIH_6268]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=804300 RKV26_RS09495 WP_000216874.1 1936965..1937705(-) (pptA) [Staphylococcus aureus strain KNIH_6268]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTAAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTATATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545