Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RKV26_RS06430 Genome accession   NZ_CP134532
Coordinates   1300416..1301567 (+) Length   383 a.a.
NCBI ID   WP_154283930.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_6268     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1295416..1306567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV26_RS06405 yfmH 1296248..1297534 (+) 1287 WP_154283928.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RKV26_RS06410 ymfI 1297534..1298238 (+) 705 WP_311163756.1 elongation factor P 5-aminopentanone reductase -
  RKV26_RS06415 - 1298343..1299170 (+) 828 WP_000214890.1 YmfK family protein -
  RKV26_RS06420 - 1299189..1299581 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  RKV26_RS06425 pgsA 1299615..1300193 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RKV26_RS06430 cinA 1300416..1301567 (+) 1152 WP_154283930.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  RKV26_RS06435 recA 1301732..1302775 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  RKV26_RS06440 rny 1303129..1304688 (+) 1560 WP_001050913.1 ribonuclease Y -
  RKV26_RS06445 - 1304942..1306356 (-) 1415 Protein_1224 transposase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 43219.49 Da        Isoelectric Point: 6.1914

>NTDB_id=804270 RKV26_RS06430 WP_154283930.1 1300416..1301567(+) (cinA) [Staphylococcus aureus strain KNIH_6268]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKISKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=804270 RKV26_RS06430 WP_154283930.1 1300416..1301567(+) (cinA) [Staphylococcus aureus strain KNIH_6268]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATATCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA

Domains

Predicted by InterProScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(4-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433