Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RKV26_RS01945 Genome accession   NZ_CP134532
Coordinates   394452..395297 (+) Length   281 a.a.
NCBI ID   WP_209205863.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_6268     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 389452..400297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV26_RS01930 - 389720..391561 (-) 1842 WP_311163539.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  RKV26_RS01935 metC 391530..392690 (-) 1161 WP_000175842.1 cystathionine beta-lyase MetC -
  RKV26_RS01940 - 392687..393790 (-) 1104 WP_000655698.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  RKV26_RS01945 spo0J 394452..395297 (+) 846 WP_209205863.1 ParB/RepB/Spo0J family partition protein Regulator
  RKV26_RS01950 - 395451..396332 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  RKV26_RS01955 - 396362..396565 (+) 204 WP_154283664.1 DUF951 domain-containing protein -
  RKV26_RS01960 ychF 396577..397674 (+) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  RKV26_RS01965 - 397760..397951 (-) 192 WP_001052483.1 hypothetical protein -
  RKV26_RS01970 rpsF 398195..398491 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  RKV26_RS01975 ssbA 398512..399015 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  RKV26_RS01980 rpsR 399067..399309 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32917.97 Da        Isoelectric Point: 10.0446

>NTDB_id=804237 RKV26_RS01945 WP_209205863.1 394452..395297(+) (spo0J) [Staphylococcus aureus strain KNIH_6268]
MSELSKSEDQRITKTKYEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQEDFLRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=804237 RKV26_RS01945 WP_209205863.1 394452..395297(+) (spo0J) [Staphylococcus aureus strain KNIH_6268]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAATATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
AGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTCAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCGATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGAAGA
TTTTCTAAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.379

92.883

0.384