Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RJD14_RS35400 Genome accession   NZ_CP134493
Coordinates   7800123..7800962 (-) Length   279 a.a.
NCBI ID   WP_311129854.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7795123..7805962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS35375 (RJD14_35375) - 7795410..7796183 (-) 774 WP_311129849.1 carbonic anhydrase -
  RJD14_RS35380 (RJD14_35380) - 7796333..7797511 (-) 1179 WP_311129850.1 exo-alpha-sialidase -
  RJD14_RS35385 (RJD14_35385) - 7797508..7798299 (-) 792 WP_311129851.1 aldolase/citrate lyase family protein -
  RJD14_RS35390 (RJD14_35390) - 7798337..7799317 (-) 981 WP_311129852.1 aldo/keto reductase -
  RJD14_RS35395 (RJD14_35395) - 7799314..7800126 (-) 813 WP_311129853.1 ABC transporter ATP-binding protein -
  RJD14_RS35400 (RJD14_35400) amiE 7800123..7800962 (-) 840 WP_311129854.1 ABC transporter ATP-binding protein Regulator
  RJD14_RS35405 (RJD14_35405) - 7800959..7801873 (-) 915 WP_193478581.1 ABC transporter permease -
  RJD14_RS35410 (RJD14_35410) - 7801877..7802806 (-) 930 WP_311129855.1 ABC transporter permease -
  RJD14_RS35415 (RJD14_35415) - 7802810..7804423 (-) 1614 WP_311129856.1 ABC transporter substrate-binding protein -
  RJD14_RS35420 (RJD14_35420) - 7804643..7805881 (+) 1239 WP_311129857.1 four-carbon acid sugar kinase family protein -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 29784.25 Da        Isoelectric Point: 5.6707

>NTDB_id=804225 RJD14_RS35400 WP_311129854.1 7800123..7800962(-) (amiE) [Streptomyces sp. CGMCC 4.1456]
MTDGTPLLDVRDLQIELITAHGVVRAVDGVTFTVGRGETVTLIGESGSGKSTTAMGVLGLLPEGLAVLSGAVRVGGRDVV
ADPGEARAVRGRTVSLIPQDPMTALSPVHTIGRQLGEAIRLRHPELSRAQAREKGIELLTQVRITRPETRWKAYPHQFSG
GMLQRILIAIALAGDPELLVADEPTSALDATVQASVLDLLMELQERTGIGILMITHDLGVARLVSDRIHVMKDGRFVESG
PAERIVDKPAEPYTRALLAAVPRLGAWDEDETSVRGATP

Nucleotide


Download         Length: 840 bp        

>NTDB_id=804225 RJD14_RS35400 WP_311129854.1 7800123..7800962(-) (amiE) [Streptomyces sp. CGMCC 4.1456]
ATGACCGACGGGACACCCCTGCTGGATGTCCGTGACCTCCAGATCGAACTCATCACCGCGCACGGCGTCGTCCGGGCCGT
CGACGGCGTGACCTTCACCGTCGGCCGCGGCGAGACCGTGACCCTCATCGGCGAGTCCGGCTCCGGCAAGTCGACCACCG
CGATGGGCGTACTGGGCCTGCTGCCGGAGGGCCTTGCCGTGCTGTCGGGCGCCGTCCGCGTCGGCGGCCGAGACGTCGTC
GCCGACCCCGGCGAGGCCCGCGCGGTACGCGGCCGGACGGTGTCCCTGATCCCGCAGGACCCGATGACCGCCCTCAGCCC
CGTCCACACCATTGGCCGGCAGCTCGGCGAGGCGATCCGCCTGCGCCACCCCGAACTGTCCAGGGCCCAGGCCCGCGAGA
AGGGCATCGAGCTGCTCACCCAGGTGCGCATCACCCGCCCCGAGACCCGCTGGAAGGCCTACCCGCACCAGTTCTCCGGC
GGCATGCTGCAACGCATCCTCATCGCCATCGCCCTGGCCGGCGATCCGGAACTACTGGTCGCCGACGAACCCACCTCCGC
CCTCGACGCGACCGTGCAGGCCAGCGTCCTGGACCTGCTGATGGAGCTCCAGGAACGCACCGGCATCGGCATACTGATGA
TCACGCACGACCTGGGCGTGGCCCGGCTGGTCTCCGACCGCATCCACGTCATGAAGGACGGCCGCTTCGTCGAGTCCGGC
CCGGCCGAACGCATCGTCGACAAACCCGCCGAGCCCTACACCCGAGCCCTCCTCGCCGCCGTGCCCCGCCTCGGCGCCTG
GGACGAGGACGAGACCTCCGTGCGAGGAGCCACCCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(28-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(237-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40

98.566

0.394
  amiE Streptococcus thermophilus LMD-9

40

98.566

0.394
  amiE Streptococcus salivarius strain HSISS4

40

98.566

0.394
  oppD Streptococcus mutans UA159

41.473

92.473

0.384