Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RJD14_RS20520 Genome accession   NZ_CP134493
Coordinates   4461472..4462512 (+) Length   346 a.a.
NCBI ID   WP_230529532.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4456472..4467512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS20505 (RJD14_20505) - 4457809..4459422 (+) 1614 WP_311127580.1 ABC transporter substrate-binding protein -
  RJD14_RS20510 (RJD14_20510) - 4459558..4460487 (+) 930 WP_193481134.1 ABC transporter permease -
  RJD14_RS20515 (RJD14_20515) - 4460480..4461442 (+) 963 WP_193481133.1 ABC transporter permease -
  RJD14_RS20520 (RJD14_20520) amiE 4461472..4462512 (+) 1041 WP_230529532.1 ABC transporter ATP-binding protein Regulator
  RJD14_RS20525 (RJD14_20525) - 4462505..4463653 (+) 1149 WP_193481131.1 ABC transporter ATP-binding protein -
  RJD14_RS20530 (RJD14_20530) - 4463738..4464148 (+) 411 WP_311127581.1 VOC family protein -
  RJD14_RS20535 (RJD14_20535) - 4464269..4466395 (-) 2127 WP_311127582.1 prolyl oligopeptidase family serine peptidase -
  RJD14_RS20540 (RJD14_20540) - 4466573..4466767 (+) 195 WP_010047829.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37815.71 Da        Isoelectric Point: 7.0149

>NTDB_id=804196 RJD14_RS20520 WP_230529532.1 4461472..4462512(+) (amiE) [Streptomyces sp. CGMCC 4.1456]
MAERPAPDGSQDTGRPLLEVRDLHVEFHTRDGVAKAVNGVNYSVSAGETLAVLGESGSGKSVTAQAIMGILDMPPGRIPK
GEILFRGQDMLKMSNEERRKIRGSKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGMSKKDAKAKAIELMDRVKIPAAKE
RVGDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVADVADKIA
VMYAGRIVETAPVHELYKRPAHPYTKGLLDSIPRLDQKGQELYAIKGLPPNLLRIPTGCAFNPRCPQAQDVCRTDIPALH
PVAERDGTELAGRGSACHFWKETIHG

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=804196 RJD14_RS20520 WP_230529532.1 4461472..4462512(+) (amiE) [Streptomyces sp. CGMCC 4.1456]
ATGGCCGAGAGGCCCGCGCCGGACGGCTCGCAGGACACGGGCCGCCCGTTGCTCGAAGTCCGCGACCTGCATGTGGAGTT
CCACACCCGCGACGGGGTCGCCAAGGCCGTCAACGGCGTCAACTACTCCGTCTCCGCGGGCGAGACACTCGCCGTGCTCG
GCGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGGCGATCATGGGCATCCTCGACATGCCGCCCGGCCGCATCCCCAAG
GGGGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCCAACGAAGAGAGGCGGAAGATCCGCGGCAGCAAGATCGC
GATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCGGTGCTCTCCGTGGGCTACCAGCTCGGCGAGATGTTCCGCGTGC
ACCAGGGCATGTCCAAGAAGGACGCCAAGGCCAAGGCCATCGAGCTGATGGACCGCGTGAAGATCCCGGCCGCCAAGGAA
CGCGTCGGCGACTACCCGCACCAGTTCTCCGGCGGTATGCGACAGCGCATCATGATCGCGATGGCGCTCGCCCTGGAGCC
GGACCTGATCATCGCCGACGAGCCGACCACGGCCCTCGACGTGACGGTGCAGGCCCAGGTGATGGACCTGCTCGCGGAGC
TGCAGCGCGAGTACAACATGGGCCTCATCCTGATCACCCACGACCTCGGCGTGGTCGCCGACGTCGCGGACAAGATCGCC
GTGATGTACGCGGGCCGGATCGTGGAGACCGCCCCGGTGCACGAGCTGTACAAGCGGCCCGCGCACCCCTACACCAAGGG
TCTGCTGGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTGTACGCGATCAAGGGTCTGCCGCCCAACCTGCTGC
GCATCCCGACCGGTTGCGCCTTCAACCCGCGCTGCCCCCAGGCCCAGGACGTCTGCCGTACGGACATTCCGGCGCTGCAC
CCGGTCGCCGAGCGGGACGGCACCGAGCTGGCCGGCCGCGGATCGGCCTGCCACTTCTGGAAGGAGACGATCCATGGCTG
A

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(38-196)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(248-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.689

85.549

0.442
  amiE Streptococcus thermophilus LMG 18311

51.536

84.682

0.436
  amiE Streptococcus thermophilus LMD-9

51.536

84.682

0.436
  oppD Streptococcus mutans UA159

47.727

89.017

0.425