Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RJD14_RS06410 Genome accession   NZ_CP134493
Coordinates   1419701..1421629 (+) Length   642 a.a.
NCBI ID   WP_311125549.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414701..1426629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS06395 (RJD14_06395) - 1415916..1416221 (+) 306 WP_193477896.1 YtxH domain-containing protein -
  RJD14_RS06400 (RJD14_06400) - 1416369..1417823 (+) 1455 WP_311125547.1 FGGY family carbohydrate kinase -
  RJD14_RS06405 (RJD14_06405) rcrP 1417968..1419701 (+) 1734 WP_311125548.1 ABC transporter ATP-binding protein Regulator
  RJD14_RS06410 (RJD14_06410) rcrQ 1419701..1421629 (+) 1929 WP_311125549.1 ABC transporter ATP-binding protein Regulator
  RJD14_RS06415 (RJD14_06415) - 1421776..1423053 (-) 1278 WP_311125550.1 RNA polymerase sigma factor -
  RJD14_RS06420 (RJD14_06420) dnaG 1423140..1425050 (-) 1911 WP_311125551.1 DNA primase -
  RJD14_RS06425 (RJD14_06425) - 1425167..1426432 (-) 1266 WP_311125552.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69582.16 Da        Isoelectric Point: 6.1478

>NTDB_id=804166 RJD14_RS06410 WP_311125549.1 1419701..1421629(+) (rcrQ) [Streptomyces sp. CGMCC 4.1456]
MAGPMGRMMAGGGPDQRSLDFKGSGKRLVARFRPERLTIYVLLLCVVLSVGLSVVGPKILGKATDLVFAGIVGRGMPQGA
SKEQVLDSMRQRGDGDVADMLRSTDFTPGKGIDFTAVGNVLLLALGVFAVAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWILALVALVTVPLSFVIATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEQNEALYEAGFRAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQGADPVPGVRPEELRGLVALE
RVSFRYDPDTPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADAILVMENGAIVEQGTHGELLASDGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=804166 RJD14_RS06410 WP_311125549.1 1419701..1421629(+) (rcrQ) [Streptomyces sp. CGMCC 4.1456]
ATGGCGGGGCCGATGGGGCGGATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGCTGGACTTCAAGGGGTCAGGCAAACG
GCTGGTCGCGCGGTTCCGGCCGGAGCGGCTGACCATCTATGTGCTGCTGCTGTGCGTGGTGCTGAGCGTGGGCCTCAGCG
TCGTCGGGCCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGGCATGCCTCAGGGGGCG
AGCAAGGAGCAGGTCCTCGACTCCATGCGGCAGCGCGGGGACGGTGACGTCGCCGACATGCTGCGCAGCACCGACTTCAC
CCCGGGCAAGGGCATCGACTTCACGGCCGTGGGGAACGTGCTGCTGCTCGCGCTGGGCGTGTTCGCGGTGGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTGAACCGGACCATGTTCCGCATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGGGAGGTGCTGTCCCGGGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAGCTCATCAACTCGGTGCTGACCATCATCGGTGTCCTCGCGATGATGT
TCTGGGTCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTCATCGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGTACGACGGGCAAGCTGAACGCCCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCCGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTCGCG
GTCGTCGGCGGCCTGCGGGTCGCCTCCGGCTCGCTGTCCATCGGCGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCCATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCGGAGCGGGTCTTCGAGC
TGCTGGACGCGGAGGAGCAGGGGGCCGATCCGGTGCCGGGCGTGCGGCCCGAGGAGTTGCGCGGGCTGGTGGCGCTGGAG
CGCGTGTCGTTCCGCTACGACCCCGACACGCCGCTGATCGAGGACCTGTCGCTGAAGGTCGAGCCCGGGCACACGGTGGC
CATCGTCGGGCCGACGGGCGCCGGGAAGACGACGCTCGTGAATCTGCTGATGCGGTTCTACGAGGTCACCGGCGGGCGCA
TCACCCTCGACGGCGTCGACATCGCGCGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCGTCCCGGGAGGTGACCCGGGGGGAGATCGAGGAGGC
GGCTCGGGCCGCGCACGCGGACCGCTTCATCCGTACGCTGCCGGACGGCTACGACACGGTGATCGACGACGAGGGGGCCG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACCAGTTCGGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCCATGGCGAAGCTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCATCGGCTGTCGACGATCCGGGACGCGGACGCGATTCTCGTGATGGAGAACGGGGCGATCGTGGAGCAGG
GGACGCACGGGGAGTTGCTGGCCTCGGACGGGGCCTACGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAA
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.322

85.047

0.377