Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RJD14_RS06405 Genome accession   NZ_CP134493
Coordinates   1417968..1419701 (+) Length   577 a.a.
NCBI ID   WP_311125548.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412968..1424701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS06375 (RJD14_06375) - 1413555..1415048 (-) 1494 WP_311125546.1 SpoIIE family protein phosphatase -
  RJD14_RS06395 (RJD14_06395) - 1415916..1416221 (+) 306 WP_193477896.1 YtxH domain-containing protein -
  RJD14_RS06400 (RJD14_06400) - 1416369..1417823 (+) 1455 WP_311125547.1 FGGY family carbohydrate kinase -
  RJD14_RS06405 (RJD14_06405) rcrP 1417968..1419701 (+) 1734 WP_311125548.1 ABC transporter ATP-binding protein Regulator
  RJD14_RS06410 (RJD14_06410) rcrQ 1419701..1421629 (+) 1929 WP_311125549.1 ABC transporter ATP-binding protein Regulator
  RJD14_RS06415 (RJD14_06415) - 1421776..1423053 (-) 1278 WP_311125550.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62654.68 Da        Isoelectric Point: 5.3812

>NTDB_id=804165 RJD14_RS06405 WP_311125548.1 1417968..1419701(+) (rcrP) [Streptomyces sp. CGMCC 4.1456]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCATLYLPTLNADIIDQGVVNGDTGYIVGYGGLMIGISLVQVVTNIGAVYYGA
RTASALGRDVRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRAMQERLDTVNQVLREQITGNRVIRAFVRDEYEQQRFRKANTDLTDFALGTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PSSPVRELRRHGHLEIRGAGFRYPGAEEPVLRAVDLLARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGQVLVDGVEVA
EIDPVLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQGKEFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIIVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=804165 RJD14_RS06405 WP_311125548.1 1417968..1419701(+) (rcrP) [Streptomyces sp. CGMCC 4.1456]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATAGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACCAGGGTGTCGTGAACGGCGACACCGGCTACA
TCGTGGGCTACGGCGGCCTGATGATCGGCATCTCGCTGGTCCAGGTCGTCACCAACATCGGTGCCGTGTACTACGGCGCC
CGTACGGCCTCGGCACTCGGGCGGGACGTGCGGGCATCCGTGTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGCTGGG
TCAGTTCGGGGCGCCGTCGCTGATCACCCGTACGACGAACGATGTCCAACAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTTGACGTGCCGCTGTCCGGGGTG
CTGGTGGCGGTCGTGCCGGTGCTGGGCATCTGCGTGACGCTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGGCGATGCA
GGAGCGGCTGGACACGGTGAACCAGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
AGTACGAGCAGCAGCGCTTCCGGAAGGCAAACACCGATCTCACGGACTTCGCGCTGGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCCTCCAGCGTCGTGCCG
CCGTCCTCGCCCGTACGGGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGGGGCGGGCTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTGCGGGCCGTGGACCTGCTCGCGCGGCCGGGTGAGACCACCGCCGTCATCGGCTCGACGGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTGCCGCGGCTGTTCGACGCGACCGGCGGGCAGGTGCTCGTGGACGGCGTCGAGGTGGCG
GAGATCGATCCGGTGCTGCTCGCGCGGACCGTCGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGCACGGTGGCGAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGGCAAGGAGTTCG
TCGAGCGTCTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGGACGAATGTCTCCGGTGGTCAGCGGCAGCGCCTC
GCCATCGCCCGGACCCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCCGCCCTGCGGGCCGCGCTGGCGCAGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.04

89.948

0.369