Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RJD14_RS00595 Genome accession   NZ_CP134493
Coordinates   137113..138465 (-) Length   450 a.a.
NCBI ID   WP_311124693.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 132113..143465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS00575 (RJD14_00575) alaS 132542..135214 (-) 2673 WP_311124691.1 alanine--tRNA ligase -
  RJD14_RS00580 (RJD14_00580) - 135214..135564 (-) 351 WP_311124692.1 hypothetical protein -
  RJD14_RS00585 (RJD14_00585) - 135574..136014 (-) 441 WP_184597204.1 DUF948 domain-containing protein -
  RJD14_RS00590 (RJD14_00590) rpsD 136204..136818 (-) 615 WP_193480208.1 30S ribosomal protein S4 -
  RJD14_RS00595 (RJD14_00595) rarA 137113..138465 (-) 1353 WP_311124693.1 replication-associated recombination protein A Machinery gene
  RJD14_RS00600 (RJD14_00600) - 138521..139177 (-) 657 WP_193480210.1 vitamin K epoxide reductase family protein -
  RJD14_RS00605 (RJD14_00605) - 139320..140186 (+) 867 WP_311124694.1 ABC transporter ATP-binding protein -
  RJD14_RS00610 (RJD14_00610) - 140183..141028 (+) 846 WP_311124695.1 ABC transporter permease -
  RJD14_RS00615 (RJD14_00615) - 141025..142221 (+) 1197 WP_311124696.1 sensor histidine kinase -
  RJD14_RS00620 (RJD14_00620) vraR 142218..142841 (+) 624 WP_311124697.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 48033.30 Da        Isoelectric Point: 6.1487

>NTDB_id=804153 RJD14_RS00595 WP_311124693.1 137113..138465(-) (rarA) [Streptomyces sp. CGMCC 4.1456]
MEPDLFTAAAEERQEKEPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEASGPAGASSVILWGPPGTGKTTLAYV
VSKATDARFVELSAITAGVKEVRAVIDGARRASGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
VISPLLSRSLLLTLEPLTDDDIKDLVQRALTDERGLNGAVALPGETESHLLRIAGGDARRALTALEAAAGAALDKGETEI
GLTTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNALQ
IAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAALEDVRKGLAGSVPAHLRDSHYKGATKIGHGQGYVYP
HDLTEGIAAQQYAPDALKNREYYTPTRHGAEARYADAVEWTRKNLGRKRS

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=804153 RJD14_RS00595 WP_311124693.1 137113..138465(-) (rarA) [Streptomyces sp. CGMCC 4.1456]
GTGGAGCCCGACCTGTTCACCGCCGCAGCAGAAGAACGCCAGGAGAAGGAGCCGTCCAGCAGCCCCCTGGCGGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTCGTGGGACAGCAGCATCTGCTGAAGCCGGGCTCGCCCCTGCGCAGACTGGTCGGCG
AGGCCTCCGGCCCCGCCGGCGCCTCCTCCGTGATCCTCTGGGGCCCGCCCGGCACCGGCAAGACCACCCTGGCGTACGTC
GTCTCCAAGGCCACCGACGCCCGCTTCGTCGAACTGTCGGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCGGTCATCGA
CGGCGCCCGCCGCGCCTCCGGCGGATACGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCAGCAAGGCCC
AGCAGGACTCCCTGCTCCCGGCCGTCGAGAACCGCTGGGTGACGCTGATCGCGGCGACGACGGAGAACCCGTACTTCTCG
GTGATCTCGCCGCTGCTGTCCCGCTCCCTGCTGCTCACCCTCGAACCGCTCACCGACGACGACATCAAGGACCTCGTCCA
GCGCGCCCTCACCGACGAGCGCGGCCTCAACGGCGCCGTCGCCCTCCCCGGGGAGACCGAGAGCCACCTCCTGCGCATCG
CCGGCGGCGACGCCCGCCGCGCCCTCACCGCCCTGGAGGCGGCCGCCGGAGCCGCCCTGGACAAGGGCGAGACGGAGATC
GGCCTGACCACCCTGGAGGAGACGGTCGACCGGGCCGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGTGGC
CAGCGCCCTGATCAAGTCCATCCGCGGCTCCGACGTCGACGCCGCCCTGCACTATCTGGCCCGGATGATCGAGGCCGGCG
AGGATCCCCGCTTCATCGCCCGCCGCCTGATGATCTCCGCCAGCGAGGACATCGGCCTGGCCGATCCGAACGCGCTGCAG
ATCGCGGTCGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCCGAGGCCGCCCTCACCCTCAGCCACGCCACGATCGC
CCTCGCCCTGGCGCCCAAGTCCAACGCCGCGACCACCGCGATCGGCGCCGCCCTCGAAGACGTACGCAAGGGGCTCGCCG
GGTCCGTGCCCGCGCACCTGCGCGACAGCCACTACAAGGGCGCGACCAAGATCGGTCACGGCCAGGGCTACGTCTACCCG
CACGACCTGACCGAGGGCATCGCCGCCCAGCAGTACGCCCCGGACGCGCTCAAGAACCGCGAGTACTACACACCGACCCG
GCACGGCGCGGAGGCCCGCTACGCGGACGCGGTCGAATGGACCCGGAAGAACCTCGGTCGAAAGCGGTCCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-440)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

AAA C-terminal domain (AAA_assoc_2)

(199-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.981

96

0.422