Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   RJW53_RS10980 Genome accession   NZ_CP134488
Coordinates   2169862..2170311 (-) Length   149 a.a.
NCBI ID   WP_012027921.1    Uniprot ID   G9CHX9
Organism   Streptococcus suis strain NLS50     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2164862..2175311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS10960 (RJW53_10960) - 2165294..2165826 (-) 533 Protein_2129 histidine phosphatase family protein -
  RJW53_RS10965 (RJW53_10965) - 2165833..2166276 (-) 444 WP_002939955.1 dUTP diphosphatase -
  RJW53_RS10970 (RJW53_10970) - 2166378..2168162 (-) 1785 WP_074389091.1 ABC transporter ATP-binding protein -
  RJW53_RS10975 (RJW53_10975) - 2168163..2169869 (-) 1707 WP_074389092.1 ABC transporter ATP-binding protein -
  RJW53_RS10980 (RJW53_10980) rcrR 2169862..2170311 (-) 450 WP_012027921.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RJW53_RS10985 (RJW53_10985) - 2170533..2171549 (+) 1017 WP_012027922.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  RJW53_RS10990 (RJW53_10990) galU 2171594..2172493 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RJW53_RS10995 (RJW53_10995) - 2172511..2173188 (-) 678 WP_012027923.1 rhomboid family intramembrane serine protease -
  RJW53_RS11000 (RJW53_11000) - 2173172..2173714 (-) 543 WP_074389093.1 5-formyltetrahydrofolate cyclo-ligase -
  RJW53_RS11005 (RJW53_11005) - 2173755..2174882 (-) 1128 WP_024403069.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17284.90 Da        Isoelectric Point: 8.9142

>NTDB_id=804144 RJW53_RS10980 WP_012027921.1 2169862..2170311(-) (rcrR) [Streptococcus suis strain NLS50]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSKVDKRFKQLVLTEKGQGKICHLKAFHEEMHHSLFWGIQKEDFDLVKQVGNQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=804144 RJW53_RS10980 WP_012027921.1 2169862..2170311(-) (rcrR) [Streptococcus suis strain NLS50]
ATGGGACATACTATTGCAGATTTTCGGAACTTGCTTAATCAGATTGAACAAATTAGTGAAACCATTGCAAAAGAATACGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGCTTCATTGCGGAACGGTCGGAAGCCGAAACCTTTGTAAAAG
ATATAGAAGCGGAATTAAAGATTTCCAAATCGGTTGCCAGCAATCTGGTCAAGAGAATGGAGAAAAATGGCTTTATCCAA
GTCCTTCCCTCTAAGGTTGACAAACGCTTCAAACAGCTGGTTTTGACAGAGAAGGGACAAGGGAAGATATGTCACCTGAA
AGCTTTTCATGAAGAAATGCACCATTCACTTTTTTGGGGCATTCAAAAAGAGGACTTTGACTTGGTTAAACAGGTGGGCA
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9CHX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416