Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   RJW53_RS06820 Genome accession   NZ_CP134488
Coordinates   1313048..1313530 (+) Length   160 a.a.
NCBI ID   WP_024381385.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS50     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1308048..1318530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS06795 (RJW53_06795) - 1309296..1310606 (-) 1311 WP_024394154.1 GntP family permease -
  RJW53_RS06800 (RJW53_06800) folK 1310657..1311145 (-) 489 WP_023369979.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RJW53_RS06805 (RJW53_06805) folB 1311142..1311504 (-) 363 WP_012027113.1 dihydroneopterin aldolase -
  RJW53_RS06810 (RJW53_06810) folP 1311497..1312309 (-) 813 WP_002938084.1 dihydropteroate synthase -
  RJW53_RS06815 (RJW53_06815) folE 1312318..1312881 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  RJW53_RS06820 (RJW53_06820) mutX 1313048..1313530 (+) 483 WP_024381385.1 8-oxo-dGTP diphosphatase Machinery gene
  RJW53_RS06825 (RJW53_06825) - 1313579..1314256 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  RJW53_RS06830 (RJW53_06830) - 1314243..1314986 (-) 744 WP_012027116.1 polyphosphate polymerase domain-containing protein -
  RJW53_RS06835 (RJW53_06835) - 1315179..1315481 (+) 303 WP_002938072.1 hypothetical protein -
  RJW53_RS06840 (RJW53_06840) - 1315502..1315768 (-) 267 WP_012775169.1 DUF2087 domain-containing protein -
  RJW53_RS06845 (RJW53_06845) pheT 1315823..1318222 (-) 2400 WP_012775584.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18540.89 Da        Isoelectric Point: 4.4960

>NTDB_id=804107 RJW53_RS06820 WP_024381385.1 1313048..1313530(+) (mutX) [Streptococcus suis strain NLS50]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=804107 RJW53_RS06820 WP_024381385.1 1313048..1313530(+) (mutX) [Streptococcus suis strain NLS50]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGGGTCGGTGGCAAGCTGGAACCTGGCGAAACACCACAGGCTTGCG
CTATTCGTGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775