Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   RJW53_RS05160 Genome accession   NZ_CP134488
Coordinates   983942..987595 (+) Length   1217 a.a.
NCBI ID   WP_161945206.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 978942..992595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS05155 (RJW53_05155) rexB 980676..983942 (+) 3267 WP_074389104.1 ATP-dependent nuclease subunit B Machinery gene
  RJW53_RS05160 (RJW53_05160) rexA 983942..987595 (+) 3654 WP_161945206.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  RJW53_RS05165 (RJW53_05165) plsY 987702..988403 (-) 702 WP_074389102.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RJW53_RS05170 (RJW53_05170) parE 988546..990495 (+) 1950 WP_074392682.1 DNA topoisomerase IV subunit B -
  RJW53_RS05175 (RJW53_05175) fic 990519..991121 (+) 603 WP_029175789.1 protein adenylyltransferase Fic -
  RJW53_RS05180 (RJW53_05180) - 991154..991657 (+) 504 WP_074389100.1 YkvA family protein -
  RJW53_RS05185 (RJW53_05185) - 991686..992246 (+) 561 WP_074389099.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 139767.17 Da        Isoelectric Point: 5.0884

>NTDB_id=804095 RJW53_RS05160 WP_161945206.1 983942..987595(+) (rexA) [Streptococcus suis strain NLS50]
MAFEQFLSAEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETTDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEQDENGEFRKLVGNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQILEQG
FKEKVLDKLYQAAEFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQVQAVPLLILLRDFVLGFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYQEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSRDAEEETP
LTAGEIEVVAKEIIRLHNEDGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAYAKLHSIYD
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVKSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAKSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAVYVEQAVKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDSLSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKINRVDCH
LILLGGERIEVVEVKIN

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=804095 RJW53_RS05160 WP_161945206.1 983942..987595(+) (rexA) [Streptococcus suis strain NLS50]
ATGGCTTTTGAACAATTTTTAAGCGCAGAAGAAATCAAGGCTGTGCAGCTGGCTGAAGCTAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CCTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGCGTCGGGATTGACCAGCTCTTTATCTCGACCTTTACA
GTCAAGGCAGCTGGTGAGTTGAAGGAGCGGATCGAGAAAAATCTCAATGAAACCATTGCGGAGACGACGGATATGGACTT
GCGCCGGCATTTGTCAGCTCAGTTGGCAGATTTGACCAAGGCGGATATTGGAACCATGGACTCCTTTACGCAGAAATTGG
TAACGACTTACGGTTATAGCCTTGGTATTTCTCCGCAGTTTCGGATTTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAACAGGATGAAAATGGTGAGTTCCGCAAACTGGTTGGCAATTT
TTCTGGCAACCGTAAGGATAATAGTGGTTTCCGTCAGGTTGTTTATCAGGTGCATGATTTTAGTCAATCGACCAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATTGAACAAATCTTAGAGCAGGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGCAGAGTTCTTCCGCTACCATGTGGAATGGGGTAGAAATGACTT
TGGTTCCGCTAAGTATTTTGCAAATGTGGAAGAAGTTTTAGATTTGCTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAACGGGTTGAAAGAATCCTTCTCATCAATGACCAGTCCAGAGGCAAGGGTTTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCAGGACTACGAGATTTGGGTCA
GGAAGTTTATGAATTGACCCTGCTGAAAGATTATCAGGTTCAAGCTGTGCCCTTGCTGATATTATTACGTGACTTTGTCT
TGGGTTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGCATTTTAGAAGAAAATGCGGACATTCGCCAGTTTTTCCAAGAAAAATACCAGGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGTTAGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGTGATATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCAATGATTTTCCAAGAGAAATTTGAACTTTATCAGGCAAATCCTCAGGCTGGG
AAATTGATTTTGCTCAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCGACTAATGCCATTTTCACGCGGCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGACGACACCCACAGTCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATACTTGATTTACGACCAGCAGGATAGCGCAAACTCTTCAAGGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGATGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTGCAAAAGAGGACGCACAATGATCTCATTATGTCCATTTTTGAAAAACATGGGATTCCTATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATTATGCTGGATACCTTGAGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCGCCCATGTTCCGATTCGATGAAGATGAACTGACACGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCAGCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTGTCTATTTTGGAAAACTGGCGTGCCTATGCCAAACTGCATTCTATTTATGAC
CTGATTTGGAAGATTTTCAATGAAAAATTCTACTATGACTATGTCGGTGCTCTTCCAAATGGCAGCAAGCGTCAGGCCAA
TCTATACGCACTTGGTTTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGCTTGTCCCGCTTCATCGCCATGATTG
ACCGTGCCTTAGCAAATGATAAGGATTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTTCAGCTGATGACCATT
CATAAGTCAAAAGGTCTGGAGTTCAAATATGTCTTCCTCATGAACATCGATAAGCGATTCAACTTGGAAGACCATTACCA
GTCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTAAAAAGCCCATTAC
CTCAGGTGCGAGTCTTAATGAACACCCTTCCTTATCAAAATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCAGAACAA
ATGCGGTTGCTTTATGTTGCACTAACGCGTGCCGAGAAGAAGCTGTATCTGGTTGGAAAGGGCAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAAATGGCGTACTTGCCAAGTCAACTCGTGAAAGCATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGATTTGCACTTCAAGAAAGTCTTTGTGACGGACGAGGATTTGACAGAG
GAGAAGATTGGTAAACTTACATTGAAGAGTAAGCTAGAAGACGCCAGTCTTAAAGATATTCGTCAATCAGAAGACATCGC
CCAGGCCTTGGACCAGCTGTCTTCTGTCCAAGAGTTGAACGAACGCTATAAGGCTGCCATTGAATTGCCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAACTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAA
CGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCAAAAATCACTGGAGCCCAAGTTGGTTCAGCAGTTCATGAACTTAT
GCAACGTTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGAAGCTCTAGAAGCTGTTTATGTTGAGCAAGCGG
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACCGAT
AAACTCCACCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATTCTTTGTCACAGGAAAACTTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTATATGATGATCATATTGTCCTCTTTGATTATAAGACAGACAAATATGACCAACCAATCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTACGCAGAGGCGTTGAAAAAAGCCTACAAGATAAATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGGATTGAAGTGGTTGAAGTCAAAATAAATTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.167

100

0.524