Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RJW53_RS02365 Genome accession   NZ_CP134488
Coordinates   454716..456377 (+) Length   553 a.a.
NCBI ID   WP_023371200.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 449716..461377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS02335 (RJW53_02335) - 450004..450912 (-) 909 WP_002936272.1 neutral zinc metallopeptidase -
  RJW53_RS02340 (RJW53_02340) xseA 451079..452422 (+) 1344 WP_023371206.1 exodeoxyribonuclease VII large subunit -
  RJW53_RS02345 (RJW53_02345) - 452397..452612 (+) 216 WP_023371204.1 exodeoxyribonuclease VII small subunit -
  RJW53_RS02350 (RJW53_02350) - 452612..453481 (+) 870 WP_074389444.1 polyprenyl synthetase family protein -
  RJW53_RS02355 (RJW53_02355) - 453474..454295 (+) 822 WP_074389446.1 TlyA family RNA methyltransferase -
  RJW53_RS02360 (RJW53_02360) - 454288..454713 (+) 426 WP_002936261.1 arginine repressor -
  RJW53_RS02365 (RJW53_02365) recN 454716..456377 (+) 1662 WP_023371200.1 DNA repair protein RecN Machinery gene
  RJW53_RS02370 (RJW53_02370) - 456471..457304 (+) 834 WP_002936253.1 DegV family protein -
  RJW53_RS02375 (RJW53_02375) - 457297..458130 (+) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  RJW53_RS02380 (RJW53_02380) - 458102..458698 (+) 597 WP_002936249.1 YpmS family protein -
  RJW53_RS02385 (RJW53_02385) - 458788..459063 (+) 276 WP_002936247.1 HU family DNA-binding protein -
  RJW53_RS02390 (RJW53_02390) - 459152..460174 (-) 1023 Protein_433 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62755.94 Da        Isoelectric Point: 4.6256

>NTDB_id=804083 RJW53_RS02365 WP_023371200.1 454716..456377(+) (recN) [Streptococcus suis strain NLS50]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRYGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=804083 RJW53_RS02365 WP_023371200.1 454716..456377(+) (recN) [Streptococcus suis strain NLS50]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAATGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGATATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGTCGGGAAATCCTGCAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCTGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGTGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCAG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGCGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CAGGTGACAAAATCACAGATGCAGCTCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.86

100

0.452