Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   OO855_RS12850 Genome accession   NZ_AP026110
Coordinates   2562757..2563233 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain CEC08123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2557757..2568233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO855_RS12820 (CEC08123_24710) - 2557922..2558827 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  OO855_RS12825 (CEC08123_24720) - 2558824..2559894 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  OO855_RS12830 (CEC08123_24730) - 2560030..2560713 (+) 684 WP_000775497.1 hypothetical protein -
  OO855_RS12835 (CEC08123_24740) - 2560729..2561139 (+) 411 WP_000846711.1 hypothetical protein -
  OO855_RS12840 (CEC08123_24750) - 2561360..2562181 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  OO855_RS12845 (CEC08123_24760) - 2562263..2562742 (+) 480 WP_000860080.1 antirestriction protein -
  OO855_RS12850 (CEC08123_24770) radC 2562757..2563233 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  OO855_RS12855 (CEC08123_24780) yeeT 2563296..2563517 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  OO855_RS12860 (CEC08123_24790) cbeA 2563591..2563959 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  OO855_RS12865 (CEC08123_24800) cbtA 2564048..2564421 (+) 374 Protein_2530 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  OO855_RS12870 (CEC08123_24810) yeeW 2564418..2564612 (+) 195 WP_000988600.1 DUF5983 family protein -
  OO855_RS12875 - 2564658..2564738 (+) 81 Protein_2532 hypothetical protein -
  OO855_RS12880 - 2565027..2565134 (-) 108 WP_074147515.1 transposase domain-containing protein -
  OO855_RS27380 - 2565086..2565409 (+) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  OO855_RS12890 (CEC08123_24820) tmaR 2565510..2565839 (-) 330 WP_000450409.1 DUF496 family protein -
  OO855_RS12895 (CEC08123_24830) yeeA 2566011..2567069 (-) 1059 WP_001202488.1 FUSC family protein -
  OO855_RS12900 (CEC08123_24840) sbmC 2567268..2567741 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=80407 OO855_RS12850 WP_001186192.1 2562757..2563233(+) (radC) [Escherichia coli strain CEC08123]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=80407 OO855_RS12850 WP_001186192.1 2562757..2563233(+) (radC) [Escherichia coli strain CEC08123]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment