Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RJW54_RS09245 Genome accession   NZ_CP134487
Coordinates   1867158..1867934 (-) Length   258 a.a.
NCBI ID   WP_024394875.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1862158..1872934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS09225 (RJW54_09205) - 1863391..1864221 (-) 831 WP_024381444.1 amino acid ABC transporter substrate-binding protein -
  RJW54_RS09230 (RJW54_09210) - 1864248..1864880 (-) 633 WP_009909533.1 amino acid ABC transporter ATP-binding protein -
  RJW54_RS09235 (RJW54_09215) - 1864890..1865531 (-) 642 WP_024394531.1 amino acid ABC transporter permease -
  RJW54_RS09240 (RJW54_09220) - 1865729..1866892 (+) 1164 Protein_1795 IS30 family transposase -
  RJW54_RS09245 (RJW54_09225) recX 1867158..1867934 (-) 777 WP_024394875.1 recombination regulator RecX Regulator
  RJW54_RS09250 (RJW54_09230) rlmD 1867972..1869324 (+) 1353 WP_012775501.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  RJW54_RS09255 (RJW54_09235) - 1869609..1869812 (+) 204 Protein_1798 transposase -
  RJW54_RS09260 (RJW54_09240) - 1870004..1871260 (+) 1257 WP_002936698.1 ISL3-like element ISSsu6 family transposase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30405.95 Da        Isoelectric Point: 9.1130

>NTDB_id=804032 RJW54_RS09245 WP_024394875.1 1867158..1867934(-) (recX) [Streptococcus suis strain MY1C3_3B]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFCELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKLLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYR

Nucleotide


Download         Length: 777 bp        

>NTDB_id=804032 RJW54_RS09245 WP_024394875.1 1867158..1867934(-) (recX) [Streptococcus suis strain MY1C3_3B]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTTGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTTAAGATAGTGACGGTACTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTCCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACTGCTGATTGATAAAAGGCTGGCAGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGGAAGGGTTT
TTCTTATGAGACGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATCGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTACGAATTGAAGCAAAGGTTGATACAGGCTTTG
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCGGTAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.581

100

0.368