Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P3U02_RS07780 Genome accession   NZ_CP120167
Coordinates   1598270..1599244 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain Dog023     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593270..1604244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U02_RS07740 (P3U02_07740) gcvT 1593771..1594862 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  P3U02_RS07745 (P3U02_07745) - 1595021..1595545 (-) 525 WP_001015120.1 shikimate kinase -
  P3U02_RS07750 (P3U02_07750) - 1595535..1595681 (-) 147 WP_001789879.1 hypothetical protein -
  P3U02_RS07755 (P3U02_07755) comGF 1595778..1596275 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3U02_RS07760 (P3U02_07760) comGE 1596193..1596492 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  P3U02_RS07765 (P3U02_07765) comGD 1596479..1596925 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  P3U02_RS07770 (P3U02_07770) comGC 1596903..1597214 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  P3U02_RS07775 (P3U02_07775) comGB 1597228..1598298 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3U02_RS07780 (P3U02_07780) comGA 1598270..1599244 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  P3U02_RS07785 (P3U02_07785) - 1599296..1599919 (-) 624 WP_320409472.1 MBL fold metallo-hydrolase -
  P3U02_RS07790 (P3U02_07790) - 1599916..1600245 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  P3U02_RS07795 (P3U02_07795) - 1600245..1601231 (-) 987 WP_000161315.1 ROK family glucokinase -
  P3U02_RS07800 (P3U02_07800) - 1601228..1601431 (-) 204 WP_000087561.1 YqgQ family protein -
  P3U02_RS07805 (P3U02_07805) - 1601412..1602875 (-) 1464 WP_001017867.1 rhomboid family protein -
  P3U02_RS07810 (P3U02_07810) - 1602887..1603426 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  P3U02_RS07815 (P3U02_07815) rpmG 1603635..1603784 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=804026 P3U02_RS07780 WP_000697220.1 1598270..1599244(-) (comGA) [Staphylococcus aureus strain Dog023]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=804026 P3U02_RS07780 WP_000697220.1 1598270..1599244(-) (comGA) [Staphylococcus aureus strain Dog023]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1