Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   RJW49_RS09630 Genome accession   NZ_CP134477
Coordinates   1906880..1907329 (-) Length   149 a.a.
NCBI ID   WP_014736499.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901880..1912329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS09610 (RJW49_09610) - 1902034..1902555 (+) 522 WP_125176877.1 hypothetical protein -
  RJW49_RS09615 (RJW49_09615) - 1902552..1903181 (+) 630 WP_014736496.1 ABC transporter ATP-binding protein -
  RJW49_RS09620 (RJW49_09620) - 1903396..1905180 (-) 1785 WP_014736497.1 ABC transporter ATP-binding protein -
  RJW49_RS09625 (RJW49_09625) - 1905181..1906887 (-) 1707 WP_074393403.1 ABC transporter ATP-binding protein -
  RJW49_RS09630 (RJW49_09630) rcrR 1906880..1907329 (-) 450 WP_014736499.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RJW49_RS09635 (RJW49_09635) - 1907551..1908567 (+) 1017 WP_014736500.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  RJW49_RS09640 (RJW49_09640) galU 1908612..1909511 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RJW49_RS09645 (RJW49_09645) - 1909529..1910206 (-) 678 WP_014736501.1 rhomboid family intramembrane serine protease -
  RJW49_RS09650 (RJW49_09650) - 1910190..1910732 (-) 543 WP_014736502.1 5-formyltetrahydrofolate cyclo-ligase -
  RJW49_RS09655 (RJW49_09655) - 1910773..1911900 (-) 1128 WP_074393404.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17539.02 Da        Isoelectric Point: 7.5184

>NTDB_id=803943 RJW49_RS09630 WP_014736499.1 1906880..1907329(-) (rcrR) [Streptococcus suis strain NLS40]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLVRQVADQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=803943 RJW49_RS09630 WP_014736499.1 1906880..1907329(-) (rcrR) [Streptococcus suis strain NLS40]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCGGAACGGTCTGAAGCTGAGACTTTTGTCAAAG
ATATTGAAGCGGAATTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGACAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGGTTAGACAAGTAGCCG
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416