Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   P3U12_RS10420 Genome accession   NZ_CP120162
Coordinates   2072205..2072921 (+) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain Dog025     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2067205..2077921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U12_RS10390 (P3U12_10390) - 2067424..2068050 (+) 627 WP_000522384.1 nitroreductase family protein -
  P3U12_RS10395 (P3U12_10395) - 2068411..2069196 (+) 786 WP_000867940.1 carbon-nitrogen family hydrolase -
  P3U12_RS14200 hld 2069793..2069873 (-) 81 WP_000046022.1 delta-hemolysin -
  P3U12_RS10405 (P3U12_10405) agrB 2070163..2070732 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  P3U12_RS10410 (P3U12_10410) agrD 2070729..2070869 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  P3U12_RS10415 (P3U12_10415) agrC 2070894..2072186 (+) 1293 WP_320409512.1 quorum-sensing sensor histidine kinase AgrC -
  P3U12_RS10420 (P3U12_10420) agrA 2072205..2072921 (+) 717 WP_000688498.1 quorum-sensing response regulator AgrA Regulator
  P3U12_RS10425 (P3U12_10425) - 2072993..2073102 (+) 110 Protein_2017 hypothetical protein -
  P3U12_RS10430 (P3U12_10430) - 2073290..2074249 (-) 960 WP_001253302.1 carbohydrate kinase family protein -
  P3U12_RS10435 (P3U12_10435) - 2074246..2075730 (-) 1485 WP_000141426.1 sucrose-6-phosphate hydrolase -
  P3U12_RS10440 (P3U12_10440) - 2075879..2076829 (-) 951 WP_000790324.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=803935 P3U12_RS10420 WP_000688498.1 2072205..2072921(+) (agrA) [Staphylococcus aureus strain Dog025]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=803935 P3U12_RS10420 WP_000688498.1 2072205..2072921(+) (agrA) [Staphylococcus aureus strain Dog025]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCGCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996