Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   L6436_RS06620 Genome accession   NZ_AP022978
Coordinates   1276644..1276967 (-) Length   107 a.a.
NCBI ID   WP_236787872.1    Uniprot ID   -
Organism   Bacillus cereus strain 30043     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271644..1281967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6436_RS06595 (BC30043_1222) - 1271977..1273263 (+) 1287 WP_236787853.1 D-alanyl-D-alanine carboxypeptidase family protein -
  L6436_RS06600 (BC30043_1223) - 1273455..1274024 (+) 570 WP_000767813.1 signal peptidase I -
  L6436_RS06605 (BC30043_1224) - 1274087..1274674 (+) 588 WP_062921647.1 CalY family protein -
  L6436_RS06610 (BC30043_1225) - 1274838..1275701 (+) 864 WP_236787861.1 DUF4047 domain-containing protein -
  L6436_RS06615 (BC30043_1226) calY 1275975..1276568 (+) 594 WP_236787870.1 biofilm matrix protein CalY -
  L6436_RS06620 (BC30043_1227) sinR 1276644..1276967 (-) 324 WP_236787872.1 helix-turn-helix domain-containing protein Regulator
  L6436_RS06625 (BC30043_1228) - 1277047..1277181 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  L6436_RS06630 (BC30043_1229) inhA1 1277525..1279912 (+) 2388 WP_236787874.1 immune inhibitor A domain-containing protein -
  L6436_RS06635 (BC30043_1230) - 1280083..1281450 (+) 1368 WP_062921650.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12368.20 Da        Isoelectric Point: 8.5404

>NTDB_id=80392 L6436_RS06620 WP_236787872.1 1276644..1276967(-) (sinR) [Bacillus cereus strain 30043]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLF
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=80392 L6436_RS06620 WP_236787872.1 1276644..1276967(-) (sinR) [Bacillus cereus strain 30043]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCTTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment