Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   RJW49_RS06195 Genome accession   NZ_CP134477
Coordinates   1183067..1186720 (-) Length   1217 a.a.
NCBI ID   WP_044672950.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1178067..1191720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS06165 (RJW49_06165) - 1178159..1178719 (-) 561 WP_014735914.1 GTP pyrophosphokinase -
  RJW49_RS06170 (RJW49_06170) - 1178748..1179251 (-) 504 WP_074393678.1 YkvA family protein -
  RJW49_RS06175 (RJW49_06175) fic 1179284..1179886 (-) 603 WP_014735916.1 protein adenylyltransferase Fic -
  RJW49_RS06180 (RJW49_06180) - 1179935..1180279 (-) 345 WP_014735917.1 hypothetical protein -
  RJW49_RS06185 (RJW49_06185) parE 1180327..1182270 (-) 1944 WP_014735918.1 DNA topoisomerase IV subunit B -
  RJW49_RS06190 (RJW49_06190) plsY 1182413..1183057 (+) 645 WP_074393677.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RJW49_RS06195 (RJW49_06195) rexA 1183067..1186720 (-) 3654 WP_044672950.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  RJW49_RS06200 (RJW49_06200) rexB 1186720..1189986 (-) 3267 WP_044672952.1 ATP-dependent nuclease subunit B Machinery gene
  RJW49_RS06205 (RJW49_06205) - 1190093..1190257 (-) 165 WP_014735922.1 hypothetical protein -
  RJW49_RS06210 (RJW49_06210) - 1190272..1190826 (-) 555 WP_024405313.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 139983.40 Da        Isoelectric Point: 5.0664

>NTDB_id=803914 RJW49_RS06195 WP_044672950.1 1183067..1186720(-) (rexA) [Streptococcus suis strain NLS40]
MAFEEFLSAEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDELFISTFT
VKAAGELKERIEKNLNETIAETTDMDLRRHLSAQLADLIKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEKDENGEFRRLVRNFSGNRKDNSGFRQVVYQVRDFSQSTSSPTKWLREQAVQADLYSQERIEQILEQG
FKEKVLDKLYQAGDFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANSQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQESAHSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAYTKLHSIYD
MIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEGIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPVLEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDMVREALEAVHVEQAIKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASMQTDPVSQENFVLRGIIDGYLLYDDHIALFDYKTDKYDQSIQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVKVN

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=803914 RJW49_RS06195 WP_044672950.1 1183067..1186720(-) (rexA) [Streptococcus suis strain NLS40]
ATGGCTTTTGAAGAATTTTTAAGCGCGGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGCCAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTCCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CCTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTGTGGGAATCGACGAGCTCTTTATCTCGACCTTTACA
GTCAAAGCGGCTGGTGAGTTGAAGGAGCGGATTGAGAAAAATCTCAATGAAACCATTGCGGAGACGACGGATATGGACTT
GCGTCGGCATTTGTCTGCCCAGTTGGCGGATTTGATCAAGGCAGATATTGGGACCATGGACTCCTTTACGCAGAAATTGG
TGACAACCTATGGTTATAGCCTTGGCATTTCTCCACAGTTTCGGATTTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAAAAGGATGAAAATGGGGAATTTCGTAGATTGGTTCGCAATTT
TTCGGGCAACCGCAAGGATAATAGTGGTTTCCGTCAGGTTGTTTATCAGGTGCGTGATTTTAGCCAATCGACGAGCAGTC
CAACTAAATGGCTGAGAGAGCAGGCTGTTCAAGCAGATTTGTACAGTCAGGAGCGTATAGAGCAGATCTTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGGAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGTTCCGCCAAGTATTTTGCAAATGTGGAAGAAGTCTTGGATTTGCTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAACGGGTTGAAAGAATCCTTCTCATCAATGACCAGTCCAGAGGCAAGGGTCTGACCAATGCCAATCGACCCAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCAGGACTTAGAGATTTGGGTCA
GGAAGTTTATGAATTGACCCTGCTGAAAGACTATCAGATTCAAGCTTTGCCAATGCTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGCAGACATCCGCCAGTTTTTCCAAGAAAAATATCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGTTAGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGCGACATTAAGCAGT
CCATCTATCGATTCCGTCAGGCAGATCCGATGATTTTCCAAGAGAAATTTGAACTGTATCAGGCAAATTCTCAGGCTGGG
AAATTGATTTTGCTCAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCAACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGACGAAACCCACAGTCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATATTTGATTTACGACCAGCAGGAGAGCGCACATTCTTCAACGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTACAAAAGCGGACGCACAATGATCTCATTATGTCCATTTTTGAAAAACATGGGATTCCTATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATCATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCACCTATGTTCCGATTCGATGAAGATGAACTGACGCGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTATCAGAAAATGGAAATAGCCCAGCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTGTCTATCTTAGAAAACTGGCGTGCCTATACCAAGCTGCATTCTATTTATGAC
ATGATTTGGAAGATATTCAATGAAAAATTCTACTATGACTATGTCGGTGCGCTTCCAAATGGCAGCAAGCGTCAGGCTAA
TCTATATGCATTAGGTTTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGCTTGTCCCGCTTCATCGCCATGATTG
ACCGTGCCTTAGCAAATGACAAGGATTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTACAGCTTATGACCATT
CACAAGTCAAAAGGTCTGGAGTTCAAATATGTCTTCCTCATGAACATCGATAAGCGATTCAACTTGGAAGACCATTACCA
GTCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATTCAATATTTAGCGGATATGAAAGATAAGGTAAATAGCCCATTGC
CTCAGGTGCGCGTCTTAATGAACACCCTTCCTTATCAAAATAATCTCCAAGAGCTAAAAATTGCCAATCTCTCAGAACAA
ATGCGGTTGCTTTATGTGGCACTAACGCGTGCCGAGAAGAAGCTGTATCTGGTTGGAAAGGGCAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAAATGGCGTACTTGCCCAATCAACTCGTGAAAGCATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTTTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGTAAACTTACATTGAAGAGTAAGCTAGAGGACGCCAGCCTTAAAGATATTCGTCAATCAGAAGGCATTGC
CCAGGCCTTGGACCAGTTGTCTTCTGTTCAAGAGTTGAACGAACGCTATAAGGCTGCCATTGAATTGCCAAGTTTACGCA
CTCCAAGTCAAATCAAGAAACTCTATGAGCCTGTCTTGGAGCAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCCAAA
CGGACCTTCAACTTGCCAGATTTTTCCAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATATGGTAAGAGAAGCCCTAGAAGCTGTTCATGTTGAGCAAGCGA
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCACCTTTTGCCAGTATGCAGACGGATCCTGTATCTCAGGAAAACTTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTGTATGATGATCATATTGCCCTCTTTGATTATAAGACAGACAAATACGACCAATCAATCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCGGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGGATTGAAGTGGTTGAAGTCAAGGTAAACTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.594

100

0.518