Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RJW49_RS05665 Genome accession   NZ_CP134477
Coordinates   1079993..1080658 (+) Length   221 a.a.
NCBI ID   WP_024405695.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074993..1085658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS05645 (RJW49_05645) - 1075541..1077487 (+) 1947 WP_074393460.1 ABC transporter permease -
  RJW49_RS05650 (RJW49_05650) - 1077917..1079119 (-) 1203 Protein_1071 IS110 family transposase -
  RJW49_RS05655 (RJW49_05655) relB 1079456..1079695 (+) 240 WP_014735844.1 type II toxin-antitoxin system RelB family antitoxin -
  RJW49_RS05660 (RJW49_05660) - 1079736..1079951 (+) 216 WP_375338507.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RJW49_RS05665 (RJW49_05665) braR 1079993..1080658 (+) 666 WP_024405695.1 response regulator transcription factor Regulator
  RJW49_RS05670 (RJW49_05670) - 1080655..1081596 (+) 942 WP_074393702.1 sensor histidine kinase -
  RJW49_RS05675 (RJW49_05675) - 1081671..1083179 (+) 1509 WP_074393701.1 phosphomannomutase/phosphoglucomutase -
  RJW49_RS05680 (RJW49_05680) xerS 1083242..1084312 (-) 1071 WP_014735849.1 tyrosine recombinase XerS Machinery gene
  RJW49_RS05685 (RJW49_05685) - 1084506..1085006 (-) 501 WP_243665382.1 AAA family ATPase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25433.19 Da        Isoelectric Point: 4.7792

>NTDB_id=803910 RJW49_RS05665 WP_024405695.1 1079993..1080658(+) (braR) [Streptococcus suis strain NLS40]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSSESEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=803910 RJW49_RS05665 WP_024405695.1 1079993..1080658(+) (braR) [Streptococcus suis strain NLS40]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAACTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCAATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTTTCTAAGCCATTTTCTCTAGG
AATTTTGGATGCCAAAATCGGTGCCTTCCTGCGTAGGGTTAATCAATTCAGCAAATCAACCGATTTGTCTATCGACCAAT
TCCAGCTTAGTTTGGACGGACGATTTTCAAGCGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTTAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATCGA
CCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACCGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.548

0.475