Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   RJW49_RS03345 Genome accession   NZ_CP134477
Coordinates   623391..623684 (+) Length   97 a.a.
NCBI ID   WP_000794247.1    Uniprot ID   A0A0H2UQ20
Organism   Streptococcus suis strain NLS40     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 618391..628684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS03295 (RJW49_03295) - 618838..619104 (+) 267 WP_074393649.1 hypothetical protein -
  RJW49_RS03300 (RJW49_03300) - 619107..619637 (+) 531 WP_074393650.1 ATP-binding protein -
  RJW49_RS03305 (RJW49_03305) - 620077..620259 (+) 183 WP_074393651.1 hypothetical protein -
  RJW49_RS03310 (RJW49_03310) - 620357..620935 (+) 579 WP_074393652.1 hypothetical protein -
  RJW49_RS03315 (RJW49_03315) - 620932..621219 (+) 288 WP_074393653.1 hypothetical protein -
  RJW49_RS03320 (RJW49_03320) - 621258..621641 (+) 384 WP_074393654.1 replication protein -
  RJW49_RS03325 (RJW49_03325) - 621789..621980 (+) 192 WP_243665381.1 hypothetical protein -
  RJW49_RS03330 (RJW49_03330) - 621998..622411 (+) 414 WP_074393671.1 hypothetical protein -
  RJW49_RS03335 (RJW49_03335) - 622413..622829 (+) 417 WP_171841004.1 minor capsid protein -
  RJW49_RS03340 (RJW49_03340) - 623036..623401 (+) 366 WP_074393655.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RJW49_RS03345 (RJW49_03345) HI0659 623391..623684 (+) 294 WP_000794247.1 helix-turn-helix domain-containing protein Machinery gene
  RJW49_RS03350 (RJW49_03350) - 623774..624319 (+) 546 WP_074393656.1 hypothetical protein -
  RJW49_RS03355 (RJW49_03355) relB 624736..624957 (+) 222 WP_012775256.1 type II toxin-antitoxin system RelB family antitoxin -
  RJW49_RS03360 (RJW49_03360) - 624959..625219 (+) 261 WP_009910443.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RJW49_RS03365 (RJW49_03365) - 625386..626027 (+) 642 WP_002935700.1 HAD family hydrolase -
  RJW49_RS03370 (RJW49_03370) - 626060..626245 (-) 186 WP_002935693.1 hypothetical protein -
  RJW49_RS03375 (RJW49_03375) - 626309..627313 (-) 1005 WP_014736150.1 lactonase family protein -
  RJW49_RS03380 (RJW49_03380) - 627449..628615 (+) 1167 WP_002935690.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10751.45 Da        Isoelectric Point: 5.1991

>NTDB_id=803895 RJW49_RS03345 WP_000794247.1 623391..623684(+) (HI0659) [Streptococcus suis strain NLS40]
MKNNAIGSNWKDVRAELFSKEEILESDMRVAIMSELIEARNEKGISQKKLEEMSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEHEQV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=803895 RJW49_RS03345 WP_000794247.1 623391..623684(+) (HI0659) [Streptococcus suis strain NLS40]
ATGAAAAATAATGCTATTGGTAGTAACTGGAAAGATGTAAGAGCTGAATTATTCAGCAAAGAGGAAATTTTGGAAAGTGA
TATGCGCGTGGCTATCATGAGTGAGCTTATCGAGGCTAGAAATGAAAAGGGCATTAGTCAGAAGAAACTAGAGGAGATGA
GCGGTGTTAGTCAACCAGTTATCGCTAGGATGGAAACTGGTAAAACTAGCCCACAACTTGATACAGTTTTAAAAGTATTG
GCAAGTCTTGGTAAGACCTTAGCAGTTGTACCATTAGAGCATGAACAAGTATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 6AF3
  PDB 6AF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.143

93.814

0.536