Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RJW55_RS06295 Genome accession   NZ_CP134473
Coordinates   1304209..1305945 (-) Length   578 a.a.
NCBI ID   WP_043033856.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1299209..1310945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS06280 (RJW55_06280) - 1300059..1301345 (-) 1287 WP_043024918.1 homoserine dehydrogenase -
  RJW55_RS06285 (RJW55_06285) - 1301450..1302373 (+) 924 WP_024377824.1 polysaccharide deacetylase family protein -
  RJW55_RS06290 (RJW55_06290) rcrQ 1302431..1304200 (-) 1770 WP_172073071.1 ABC transporter ATP-binding protein Regulator
  RJW55_RS06295 (RJW55_06295) rcrP 1304209..1305945 (-) 1737 WP_043033856.1 ABC transporter ATP-binding protein Regulator
  RJW55_RS06300 (RJW55_06300) - 1306021..1306263 (-) 243 WP_002940680.1 KH domain-containing protein -
  RJW55_RS06305 (RJW55_06305) rpsP 1306285..1306557 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  RJW55_RS06310 (RJW55_06310) - 1306682..1306990 (-) 309 WP_015646885.1 DUF4298 domain-containing protein -
  RJW55_RS06315 (RJW55_06315) pcp 1306990..1307637 (-) 648 WP_043025527.1 pyroglutamyl-peptidase I -
  RJW55_RS06320 (RJW55_06320) - 1307634..1308389 (-) 756 WP_079269177.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65200.48 Da        Isoelectric Point: 5.1916

>NTDB_id=803818 RJW55_RS06295 WP_043033856.1 1304209..1305945(-) (rcrP) [Streptococcus suis strain TMW_SS028]
MNLIWTYLKKYPKWIALDLFGAFLFIVVNLGLPTFLARMIDQGITKNNVDQLYFWAGMMGLIVLLGIVGRVTLAYAAGQL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQENRFAEVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALEPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=803818 RJW55_RS06295 WP_043033856.1 1304209..1305945(-) (rcrP) [Streptococcus suis strain TMW_SS028]
ATGAATCTGATTTGGACCTATTTGAAAAAATACCCAAAGTGGATTGCTTTGGACTTGTTCGGAGCTTTCCTATTCATTGT
AGTTAACTTGGGCTTGCCGACATTTTTGGCAAGAATGATTGACCAAGGGATTACAAAAAACAATGTTGATCAATTATATT
TCTGGGCAGGCATGATGGGTTTGATTGTTTTGCTCGGTATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGACAGTTG
ACAACCAATATCGTCAAGGATATTCGAAATGATCTGTACGAAAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTGCTGATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACCCCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCAAGTCTGGCTTGGACAGTAGCC
GTAGCCATGCCATTTTTGGTTTTCGTCATTTTTTATGTAGCTACTAAAACTCGACCTCTTTCTGAAAAACAACAGAAACG
ATTAGACACCATTAACCAGTATGTTCGTGAAAATCTTATGGGCTTGCGGGTCATTCGTGCCTTTACGCGTGAAGAGTTCC
AAGAAAACCGTTTTGCAGAGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCTATTGTCTGGTTTGCTTTGGAACCCTTGAAAACAGGCAGTTT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCACTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCTATCTCTATTTCTAAGAATGAA
GACGGCATAACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGTAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAACAGCCGGATATCTATATCTTTGATGACTCTTTCTCAGCCTTGGACTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCACAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAATGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.167

100

0.396