Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P3U61_RS09740 Genome accession   NZ_CP120150
Coordinates   2064202..2066142 (-) Length   646 a.a.
NCBI ID   WP_410254255.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog029_1     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2059202..2071142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U61_RS09725 (P3U61_09725) recQ 2059450..2061231 (-) 1782 WP_015728744.1 DNA helicase RecQ -
  P3U61_RS09730 (P3U61_09730) - 2061241..2063118 (-) 1878 WP_100006802.1 ABC-F family ATP-binding cassette domain-containing protein -
  P3U61_RS09735 (P3U61_09735) - 2063230..2064045 (+) 816 WP_015728742.1 ZIP family metal transporter -
  P3U61_RS09740 (P3U61_09740) comA 2064202..2066142 (-) 1941 WP_410254255.1 peptide cleavage/export ABC transporter Regulator
  P3U61_RS09745 (P3U61_09745) comA/nlmT 2066142..2066339 (-) 198 WP_197737723.1 cysteine peptidase family C39 domain-containing protein Regulator
  P3U61_RS09750 (P3U61_09750) - 2066263..2066454 (-) 192 WP_197737724.1 cysteine peptidase family C39 domain-containing protein -
  P3U61_RS09755 (P3U61_09755) - 2066829..2067137 (-) 309 WP_063284913.1 DUF3884 family protein -
  P3U61_RS09760 (P3U61_09760) - 2067212..2068342 (-) 1131 WP_270871703.1 glycosyltransferase -

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 73632.30 Da        Isoelectric Point: 9.8246

>NTDB_id=803817 P3U61_RS09740 WP_410254255.1 2064202..2066142(-) (comA) [Staphylococcus pseudintermedius strain Dog029_1]
MRCDKKYIYIADPVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTSFIPLLLKEKRLIIKIIIISILVNMIN
ILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSINILSPYIKHLFRLPITFFETGRA
GDILSRLNDTNSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIAFGFMNSFERKRIKSMEANAT
LSSYLMEDITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQLILNVSILWVGANLVIDNQISIG
TLLVFNSLMIYFMNPIENIMNLQLKLQIAGVANNGLNEIFTVKSEFEKNKLDIKLNQNSSKLIFSNISYGYVYEKEILTD
INITIEHNSKVAFIGESGSGKTTLAKLMVSFFEPSKGKITLGGLDITNINKSVLRQQIIYIPQQTYIFNGTILENLLLGV
VKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSILIMDEATSNIDILTERKIIN
NLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLINNGIFCINTTNVKNEMKVLFFHTFYFL
NFTIIT

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=803817 P3U61_RS09740 WP_410254255.1 2064202..2066142(-) (comA) [Staphylococcus pseudintermedius strain Dog029_1]
ATTAGATGTGATAAAAAGTATATCTATATAGCTGACCCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGA
AGAGTGGACTGGAGTTACAATCTTATTAAAACCTACATCTTTATATAAGCCTATAAAGCAAGATAAAGTTCGTTTAACTT
CTTTTATACCTTTATTATTAAAAGAAAAAAGATTGATTATAAAAATAATAATCATTTCCATTTTAGTCAATATGATAAAT
ATTTTAGGTTCATATTTTATGAAGTCAATTATTGATTTTTATATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTC
CATGGCTTTAATTGCTTCTTACATTATGCAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGA
CATATTCTATAAATATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGGGAAGAGCA
GGAGACATACTATCAAGACTTAATGATACAAATTCAATTACTGATGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGA
TGTTACAATAATAGTTGGCATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTC
CTATTTATGCCGTAATTGCTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACT
TTGTCTTCTTATTTGATGGAAGATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCA
GATAAAATATAATTTTTCGAATTATTACGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAA
AGGTTGTTCAATTAATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGACAATCAAATTTCAATTGGA
ACTTTGCTTGTTTTTAATTCATTAATGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACA
AATAGCAGGTGTGGCTAATAATGGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCA
AATTGAACCAAAACTCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGTGTACGAAAAAGAAATCCTTACAGAT
ATTAATATAACAATAGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAATT
GATGGTTAGTTTTTTTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTT
TACGACAGCAGATTATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTA
GTTAAAGAGGTTACGCAAAAGGACATAGATAGTGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACT
TGGACTTGATAGTGTATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCAC
TATTAACAAATTCTTCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAAT
AATTTGATGGCGTTAAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGT
TTTAGCAAAAGGAAAAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTA
ATAATGGTATTTTTTGTATTAACACAACCAATGTGAAGAACGAAATGAAGGTACTGTTTTTTCACACCTTTTATTTTCTG
AATTTTACAATTATAACTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(398-548)

Peptidase C39 family (Peptidase_C39)

(3-39)

ABC transporter transmembrane region (ABC_membrane)

(67-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

52.28

95.046

0.497
  comA Streptococcus mitis NCTC 12261

52.117

95.046

0.495
  comA Streptococcus pneumoniae D39

51.792

95.046

0.492
  comA Streptococcus pneumoniae R6

51.792

95.046

0.492
  comA Streptococcus pneumoniae Rx1

51.792

95.046

0.492
  comA Streptococcus pneumoniae TIGR4

51.466

95.046

0.489
  comA Streptococcus gordonii str. Challis substr. CH1

51.466

95.046

0.489
  comA/nlmT Streptococcus mutans UA159

48.764

93.963

0.458