Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RJW55_RS06290 Genome accession   NZ_CP134473
Coordinates   1302431..1304200 (-) Length   589 a.a.
NCBI ID   WP_172073071.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1297431..1309200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS06270 (RJW55_06270) murB 1298055..1298960 (-) 906 WP_043024915.1 UDP-N-acetylmuramate dehydrogenase -
  RJW55_RS06275 (RJW55_06275) thrB 1299195..1300055 (-) 861 WP_029188460.1 homoserine kinase -
  RJW55_RS06280 (RJW55_06280) - 1300059..1301345 (-) 1287 WP_043024918.1 homoserine dehydrogenase -
  RJW55_RS06285 (RJW55_06285) - 1301450..1302373 (+) 924 WP_024377824.1 polysaccharide deacetylase family protein -
  RJW55_RS06290 (RJW55_06290) rcrQ 1302431..1304200 (-) 1770 WP_172073071.1 ABC transporter ATP-binding protein Regulator
  RJW55_RS06295 (RJW55_06295) rcrP 1304209..1305945 (-) 1737 WP_043033856.1 ABC transporter ATP-binding protein Regulator
  RJW55_RS06300 (RJW55_06300) - 1306021..1306263 (-) 243 WP_002940680.1 KH domain-containing protein -
  RJW55_RS06305 (RJW55_06305) rpsP 1306285..1306557 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  RJW55_RS06310 (RJW55_06310) - 1306682..1306990 (-) 309 WP_015646885.1 DUF4298 domain-containing protein -
  RJW55_RS06315 (RJW55_06315) pcp 1306990..1307637 (-) 648 WP_043025527.1 pyroglutamyl-peptidase I -
  RJW55_RS06320 (RJW55_06320) - 1307634..1308389 (-) 756 WP_079269177.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65820.82 Da        Isoelectric Point: 5.5789

>NTDB_id=803817 RJW55_RS06290 WP_172073071.1 1302431..1304200(-) (rcrQ) [Streptococcus suis strain TMW_SS028]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINVSYIAIMLGLYAFR
AIMYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQKVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=803817 RJW55_RS06290 WP_172073071.1 1302431..1304200(-) (rcrQ) [Streptococcus suis strain TMW_SS028]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
TAAGACTATTAGCGCAGTCATGAATGCCTTAGAACCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TAGACATAGCAAATGGAGTAGAAGGAGCGCAGATAAATGTTTCCTATATCGCTATCATGCTTGGTCTGTACGCATTCCGT
GCCATCATGTATGAAATCGGTGCCTATGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGGCGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTACAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGAAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAATAT
CGCCTATGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGCACATTGACGGTCGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCCAAATCCTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGATGAAGAAGACGCCAATGCACTAGAGTTGACAGAAAGTCTGACAGG
ACAAGTTAGCTTTGAGCAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCCATCGTTGGTCCAACAGGGGCTGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAATCTGCGTTTTGGACGTCTGGATGCGACAGATGAGG
AAATTGTAGAAGCTGCTAAAGCTGCCAACGTTGACCATTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACTCGTTTGGAACTCTTGATTCAAAAAGCCATGAAACGCTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.101

99.66

0.43