Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RJW55_RS05920 Genome accession   NZ_CP134473
Coordinates   1221065..1221730 (+) Length   221 a.a.
NCBI ID   WP_043025615.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216065..1226730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS05890 (RJW55_05890) - 1217185..1217325 (+) 141 WP_032500004.1 hypothetical protein -
  RJW55_RS05895 (RJW55_05895) - 1217338..1217721 (+) 384 WP_043025610.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  RJW55_RS05900 (RJW55_05900) - 1217738..1218490 (+) 753 WP_029173099.1 ABC transporter ATP-binding protein -
  RJW55_RS05905 (RJW55_05905) - 1218491..1220437 (+) 1947 WP_043025612.1 FtsX-like permease family protein -
  RJW55_RS05910 (RJW55_05910) relB 1220528..1220767 (+) 240 WP_015646833.1 type II toxin-antitoxin system RelB family antitoxin -
  RJW55_RS05915 (RJW55_05915) - 1220757..1221023 (+) 267 WP_032510493.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RJW55_RS05920 (RJW55_05920) braR 1221065..1221730 (+) 666 WP_043025615.1 response regulator transcription factor Regulator
  RJW55_RS05925 (RJW55_05925) - 1221727..1222668 (+) 942 WP_043025617.1 sensor histidine kinase -
  RJW55_RS11565 - 1222612..1222919 (-) 308 Protein_1141 hypothetical protein -
  RJW55_RS05930 (RJW55_05930) - 1223028..1224149 (+) 1122 Protein_1142 IS110 family transposase -
  RJW55_RS05935 (RJW55_05935) - 1224524..1225718 (-) 1195 Protein_1143 IS1182 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25432.25 Da        Isoelectric Point: 5.0025

>NTDB_id=803814 RJW55_RS05920 WP_043025615.1 1221065..1221730(+) (braR) [Streptococcus suis strain TMW_SS028]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFTNKSEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFDRIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=803814 RJW55_RS05920 WP_043025615.1 1221065..1221730(+) (braR) [Streptococcus suis strain TMW_SS028]
ATGAAAAAAGAAAAGATTTATATTGTTGAAGACGATGAGATGATTGTCCAACTCTTGAAGCAACACCTGGGCAAATCGTA
TCAGGTAGAAAGTGTTCAGAATTTTCGAGCTGTCAGTCAGGAAGTGGCTGAAATCAAGCCAGACTTGGTGCTGATGGACA
TTAGCCTGCCTTATTACAACGGCTTTTACTGGACGACGGAAATCCGTAAAACCATGACCATGCCCATTATTTTTATCTCT
TCTAGCGATGATGAGATGAATGCAGTCATGGCCATGAACATGGGTGGCGATGATTTTGTATCCAAGCCTTTTTCACTGGG
AATTTTGGATGCCAAAATCGGTGCCTTTCTGCGTCGGGTCAATCAATTTAGCAAATCAACCGATTTGTCTATCGACCAAT
TCCAACTTAGTTTAGACGGGCGATTTACAAACAAATCGGAACAGGTTCAATTGTCTCCAACAGAAACCAAGATTTTGTCC
GCCTTGCTAGAAAGACAAGGGCAGATTGTTAGTAAAGAGGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATCGA
CCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTAAGTGAAGTTGGTTTTGACCGTATTCATACTGTTC
GAGGTGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.548

0.475