Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RJW56_RS08275 Genome accession   NZ_CP134472
Coordinates   1658840..1660501 (-) Length   553 a.a.
NCBI ID   WP_024394991.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1653840..1665501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS08245 (RJW56_08245) - 1653858..1655144 (+) 1287 WP_024394995.1 hydroxymethylglutaryl-CoA reductase, degradative -
  RJW56_RS08250 (RJW56_08250) - 1655285..1655752 (-) 468 WP_024394994.1 GNAT family N-acetyltransferase -
  RJW56_RS08255 (RJW56_08255) - 1656154..1656429 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  RJW56_RS08260 (RJW56_08260) - 1656519..1657115 (-) 597 WP_024394993.1 YpmS family protein -
  RJW56_RS08265 (RJW56_08265) - 1657087..1657920 (-) 834 WP_172051241.1 GDSL-type esterase/lipase family protein -
  RJW56_RS08270 (RJW56_08270) - 1657913..1658746 (-) 834 WP_024394992.1 DegV family protein -
  RJW56_RS08275 (RJW56_08275) recN 1658840..1660501 (-) 1662 WP_024394991.1 DNA repair protein RecN Machinery gene
  RJW56_RS08280 (RJW56_08280) - 1660504..1660929 (-) 426 WP_002936261.1 arginine repressor -
  RJW56_RS08285 (RJW56_08285) - 1660922..1661743 (-) 822 WP_172051240.1 TlyA family RNA methyltransferase -
  RJW56_RS08290 (RJW56_08290) - 1661736..1662605 (-) 870 WP_009910557.1 polyprenyl synthetase family protein -
  RJW56_RS08295 (RJW56_08295) - 1662605..1662820 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  RJW56_RS08300 (RJW56_08300) xseA 1662795..1664138 (-) 1344 WP_172051239.1 exodeoxyribonuclease VII large subunit -
  RJW56_RS08305 (RJW56_08305) - 1664306..1665214 (+) 909 WP_013730499.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62647.82 Da        Isoelectric Point: 4.6778

>NTDB_id=803736 RJW56_RS08275 WP_024394991.1 1658840..1660501(-) (recN) [Streptococcus suis strain 1522228]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAGIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQALAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=803736 RJW56_RS08275 WP_024394991.1 1658840..1660501(-) (recN) [Streptococcus suis strain 1522228]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGGGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGAGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATTTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTCGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAGGAAGGCAAGACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGCATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.333

100

0.447