Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   RJW56_RS05435 Genome accession   NZ_CP134472
Coordinates   1123405..1123887 (-) Length   160 a.a.
NCBI ID   WP_002938080.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1118405..1128887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS05410 (RJW56_05410) pheT 1118713..1121112 (+) 2400 WP_172051249.1 phenylalanine--tRNA ligase subunit beta -
  RJW56_RS05415 (RJW56_05415) - 1121167..1121433 (+) 267 WP_002938070.1 DUF2087 domain-containing protein -
  RJW56_RS05420 (RJW56_05420) - 1121454..1121756 (-) 303 WP_002938072.1 hypothetical protein -
  RJW56_RS05425 (RJW56_05425) - 1121949..1122692 (+) 744 WP_002938076.1 polyphosphate polymerase domain-containing protein -
  RJW56_RS05430 (RJW56_05430) - 1122679..1123356 (+) 678 WP_002938079.1 DUF4956 domain-containing protein -
  RJW56_RS05435 (RJW56_05435) mutX 1123405..1123887 (-) 483 WP_002938080.1 8-oxo-dGTP diphosphatase Machinery gene
  RJW56_RS05440 (RJW56_05440) folE 1124054..1124617 (+) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  RJW56_RS05445 (RJW56_05445) folP 1124626..1125438 (+) 813 WP_002938084.1 dihydropteroate synthase -
  RJW56_RS05450 (RJW56_05450) folB 1125431..1125793 (+) 363 WP_002938086.1 dihydroneopterin aldolase -
  RJW56_RS05455 (RJW56_05455) folK 1125790..1126278 (+) 489 WP_009910002.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RJW56_RS05460 (RJW56_05460) - 1126329..1127639 (+) 1311 WP_002938090.1 GntP family permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18496.88 Da        Isoelectric Point: 4.5662

>NTDB_id=803719 RJW56_RS05435 WP_002938080.1 1123405..1123887(-) (mutX) [Streptococcus suis strain 1522228]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=803719 RJW56_RS05435 WP_002938080.1 1123405..1123887(-) (mutX) [Streptococcus suis strain 1522228]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGTAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGGCAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775