Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   RJW56_RS03455 Genome accession   NZ_CP134472
Coordinates   702240..705893 (+) Length   1217 a.a.
NCBI ID   WP_024394348.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 697240..710893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS03450 (RJW56_03450) rexB 698974..702240 (+) 3267 WP_029178565.1 ATP-dependent nuclease subunit B Machinery gene
  RJW56_RS03455 (RJW56_03455) rexA 702240..705893 (+) 3654 WP_024394348.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  RJW56_RS03460 (RJW56_03460) plsY 705903..706547 (-) 645 WP_172051277.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RJW56_RS03465 (RJW56_03465) parE 706690..708639 (+) 1950 WP_002935482.1 DNA topoisomerase IV subunit B -
  RJW56_RS03470 (RJW56_03470) fic 708663..709265 (+) 603 WP_002935485.1 protein adenylyltransferase Fic -
  RJW56_RS03475 (RJW56_03475) - 709298..709792 (+) 495 WP_002935487.1 YkvA family protein -
  RJW56_RS03480 (RJW56_03480) - 709795..710247 (+) 453 WP_002935488.1 hypothetical protein -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 139759.14 Da        Isoelectric Point: 5.0357

>NTDB_id=803702 RJW56_RS03455 WP_024394348.1 702240..705893(+) (rexA) [Streptococcus suis strain 1522228]
MAFEEFLSAEEIKALQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETTDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPKFRILQDETEKASLK
KEVFDQLFADYLEQDENGAFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIELILEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENVDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQADSQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIISIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAFAKMHSIYD
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIVMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQDNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKDNADKLAKKYDGKKADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKVAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAVHAEQAIKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPSQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVKVN

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=803702 RJW56_RS03455 WP_024394348.1 702240..705893(+) (rexA) [Streptococcus suis strain 1522228]
ATGGCATTTGAAGAATTTTTAAGCGCGGAAGAAATCAAGGCTTTGCAGCTGGCGGAAGCTAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTCCTGGTCTCTGCATCGGCTGGGTCAGGCAAGA
CCTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGCGTCGGGATTGACCAGCTCTTTATCTCGACCTTTACA
GTCAAGGCGGCTGGTGAGTTGAAGGAGCGGATCGAGAAAAATCTCAATGAAACCATTGCGGAGACGACGGATATGGACTT
GCGACGGCATTTGTCAGCCCAGTTGGCGGATTTGACCAAGGCAGACATCGGGACCATGGACTCCTTTACGCAGAAATTGG
TGACAACCTATGGTTATAGCCTTGGTATTTCTCCGAAGTTTCGGATTTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAGGTCTTTGACCAGCTCTTTGCAGATTATCTTGAACAGGATGAAAATGGTGCATTCCGCAAACTGGTTCGCAATTT
TTCGGGCAACCGTAAGGATAATAGTGGTTTCCGTCAGGTTGTTTATCAGGTGCATGATTTTAGCCAATCGACAAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCTGATCTTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGTTCCGCCAAGTATTTTGCAAATGTGGAAGAAGTTTTAGATTTGCTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAGCGGGTTGAAAAAGTCCTTCTTATCAACGACCAGTCCAGAGGCAAGGGTCTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCTGGACTACGAGATTTGGGGCA
GGAAGTTTATGAATTAACCCTGCTGAAAGACTATCAGATTCAAGCTTTGCCAATGCTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGTGGACATTCGCCAGTTTTTCCAAGAAAAATACCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGCTGGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGCGATATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAAGAGAAATTTGAACTTTACCAGGCAGATTCTCAGGCTGGA
AAATTGATTTTGCTTAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCGACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGATGAAACCCACAGTCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATACTTGATTTACGACCAGCAGGATAGCGCAAACTCTTCAACGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATCGAGGTTGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTGCAAAAACGGACGCACAATGACCTCATTATATCCATTTTTGAAAAACATGGGATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATTATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCTCTTCTCAAATCGCCTATGTTCCGATTCGATGAGGATGAGCTGACACGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCAGCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTATCTATTTTGGAAAACTGGCGTGCTTTTGCCAAAATGCATTCTATTTATGAC
CTGATTTGGAAGATTTTCAATGAAAAATTCTACTATGACTATGTCGGTGCTCTTCCAAATGGCAGCAAGCGTCAGGCAAA
TCTATATGCCCTAGGTTTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGCTTGTCTCGTTTCATCGTCATGATTG
ACCGTGCCTTAGCAAATGACAAGGACTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTTCAGCTGATGACCATT
CATAAGTCAAAAGGTCTAGAGTTCAAATATGTCTTCCTCATGAACATCGATAAACGATTCAACTTGGAAGACCATTACCA
GTCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTGAATAGCCCATTAC
CTCAGGTGCGAGTCTTAATGAACACCCTTCCTTATCAAGATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCAGAACAA
ATGCGGTTGCTTTATGTTGCACTAACGCGTGCCGAGAAGAAGCTGTATCTGGTTGGAAAGGACAATGCTGATAAGTTAGC
TAAAAAATACGATGGCAAAAAGGCAGATGGCGTACTAGCCCAATCAACTCGTGAAAGCGTGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGAAAACTTACATTGAAGAGTAAGCTAGAAGATGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATTGC
TCAGGCCTTGGACCAGTTGTCTTCTGTTCAAGAGTTGAACGAACGCTATAAGGTTGCCATTGAATTGCCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAACTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAA
CGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCTAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGAAGCCCTAGAAGCTGTTCATGCTGAGCAAGCGA
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCACCATTTGCAAGTTTGCAGACAGATTCTGTATCTCAGGAAAACTTTGTCCTTCGTGGGATTAT
AGATGGCTACCTACTATATGATGATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGACCAACCAAGCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCCGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGAATAGAAGTGGTCGAAGTCAAGGTAAACTAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD-like helicase C-terminal domain (UvrD_C)

(483-898)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.961

100

0.523