Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RJW56_RS00210 Genome accession   NZ_CP134472
Coordinates   28696..29478 (+) Length   260 a.a.
NCBI ID   WP_024394840.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23696..34478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS00190 (RJW56_00190) mreD 24517..25032 (+) 516 WP_024394837.1 rod shape-determining protein MreD -
  RJW56_RS00195 (RJW56_00195) pcsB 25117..26373 (+) 1257 WP_024394838.1 peptidoglycan hydrolase PcsB -
  RJW56_RS00200 (RJW56_00200) - 26476..27444 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  RJW56_RS00205 (RJW56_00205) - 27531..28709 (+) 1179 WP_024394839.1 pyridoxal phosphate-dependent aminotransferase -
  RJW56_RS00210 (RJW56_00210) recO 28696..29478 (+) 783 WP_024394840.1 DNA repair protein RecO Machinery gene
  RJW56_RS00215 (RJW56_00215) plsX 29475..30482 (+) 1008 WP_014637253.1 phosphate acyltransferase PlsX -
  RJW56_RS00220 (RJW56_00220) - 30475..30723 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  RJW56_RS00225 (RJW56_00225) purC 30841..31548 (+) 708 WP_024394841.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30514.98 Da        Isoelectric Point: 5.4193

>NTDB_id=803663 RJW56_RS00210 WP_024394840.1 28696..29478(+) (recO) [Streptococcus suis strain 1522228]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSRLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=803663 RJW56_RS00210 WP_024394840.1 28696..29478(+) (recO) [Streptococcus suis strain 1522228]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAGGATGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAGGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGAATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTAGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669