Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P3U33_RS12495 Genome accession   NZ_CP120139
Coordinates   2403712..2404683 (-) Length   323 a.a.
NCBI ID   WP_025905417.1    Uniprot ID   A0AAJ4SJJ8
Organism   Mammaliicoccus sciuri strain Dog036     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2405375..2435464 2403712..2404683 flank 692


Gene organization within MGE regions


Location: 2403712..2435464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U33_RS12495 (P3U33_12495) ceuB 2403712..2404683 (-) 972 WP_025905417.1 ABC transporter permease Machinery gene
  P3U33_RS12500 (P3U33_12500) - 2404809..2405225 (-) 417 WP_058612032.1 FixH family protein -
  P3U33_RS12505 (P3U33_12505) nrdF 2405375..2406346 (-) 972 WP_048539937.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  P3U33_RS12510 (P3U33_12510) nrdE 2406375..2408480 (-) 2106 WP_058612033.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  P3U33_RS12515 (P3U33_12515) nrdI 2408443..2408841 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  P3U33_RS12520 (P3U33_12520) - 2409215..2410099 (+) 885 WP_048539939.1 DMT family transporter -
  P3U33_RS12525 (P3U33_12525) queF 2410099..2410599 (+) 501 WP_048539940.1 preQ(1) synthase -
  P3U33_RS12530 (P3U33_12530) - 2410893..2412407 (+) 1515 WP_048539941.1 peptide MFS transporter -
  P3U33_RS12535 (P3U33_12535) - 2412753..2414255 (+) 1503 WP_048539942.1 peptide MFS transporter -
  P3U33_RS12540 (P3U33_12540) - 2414295..2414876 (-) 582 WP_048539943.1 5' nucleotidase, NT5C type -
  P3U33_RS12545 (P3U33_12545) hisC 2414941..2416008 (-) 1068 WP_065380988.1 histidinol-phosphate transaminase -
  P3U33_RS12550 (P3U33_12550) - 2416111..2417625 (-) 1515 WP_065380987.1 ABC transporter permease/substrate-binding protein -
  P3U33_RS12555 (P3U33_12555) - 2417622..2418584 (-) 963 WP_048539946.1 ABC transporter ATP-binding protein -
  P3U33_RS12560 (P3U33_12560) recQ 2418674..2420452 (-) 1779 WP_323709219.1 DNA helicase RecQ -
  P3U33_RS12565 (P3U33_12565) - 2420475..2422346 (-) 1872 WP_065380986.1 ABC-F family ATP-binding cassette domain-containing protein -
  P3U33_RS12570 (P3U33_12570) - 2422432..2423247 (+) 816 WP_037588700.1 ZIP family metal transporter -
  P3U33_RS12575 (P3U33_12575) ltaS 2423977..2425917 (-) 1941 WP_049319712.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  P3U33_RS12580 (P3U33_12580) - 2426118..2427122 (-) 1005 WP_058611507.1 biotin-dependent carboxyltransferase family protein -
  P3U33_RS12585 (P3U33_12585) - 2427113..2427814 (-) 702 WP_049319710.1 carboxyltransferase domain-containing protein -
  P3U33_RS12590 (P3U33_12590) - 2427855..2428067 (-) 213 WP_049319709.1 hypothetical protein -
  P3U33_RS12595 (P3U33_12595) - 2428129..2429877 (-) 1749 WP_065380977.1 bifunctional chorismate-binding protein/class IV aminotransferase -
  P3U33_RS12600 (P3U33_12600) - 2429855..2430457 (-) 603 WP_323709220.1 aminodeoxychorismate/anthranilate synthase component II -
  P3U33_RS12605 (P3U33_12605) queC 2430661..2431329 (+) 669 WP_058611510.1 7-cyano-7-deazaguanine synthase QueC -
  P3U33_RS12610 (P3U33_12610) queD 2431329..2431760 (+) 432 WP_058611511.1 6-carboxytetrahydropterin synthase QueD -
  P3U33_RS12615 (P3U33_12615) queE 2431753..2432463 (+) 711 WP_323709221.1 7-carboxy-7-deazaguanine synthase QueE -
  P3U33_RS12620 (P3U33_12620) - 2432560..2433228 (-) 669 WP_058611513.1 DUF1129 family protein -
  P3U33_RS12625 (P3U33_12625) - 2433221..2433559 (-) 339 WP_058611514.1 PadR family transcriptional regulator -
  P3U33_RS12630 (P3U33_12630) - 2433745..2434386 (+) 642 WP_037589261.1 hypothetical protein -
  P3U33_RS12635 (P3U33_12635) - 2434438..2434686 (+) 249 WP_025904751.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  P3U33_RS12640 (P3U33_12640) - 2434742..2435464 (-) 723 WP_058611515.1 YwiC-like family protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35476.97 Da        Isoelectric Point: 10.7243

>NTDB_id=803574 P3U33_RS12495 WP_025905417.1 2403712..2404683(-) (ceuB) [Mammaliicoccus sciuri strain Dog036]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=803574 P3U33_RS12495 WP_025905417.1 2403712..2404683(-) (ceuB) [Mammaliicoccus sciuri strain Dog036]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATTTTATTAGTAATTGCAACGTTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCAAGAA
CAGTCAGTATTATTATTTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCATCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGACTGATTATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCGCATACAGCTGTATTTGGTGCATTGTTTGTTATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502