Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   P3T90_RS03840 Genome accession   NZ_CP120137
Coordinates   870563..871279 (-) Length   238 a.a.
NCBI ID   WP_037542586.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog040     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 865563..876279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T90_RS03820 (P3T90_03815) - 865751..866836 (-) 1086 WP_275320955.1 YeeE/YedE family protein -
  P3T90_RS03825 (P3T90_03820) - 867068..868015 (+) 948 WP_275313071.1 LacI family DNA-binding transcriptional regulator -
  P3T90_RS03830 (P3T90_03825) - 868071..869555 (+) 1485 WP_323694446.1 sucrose-6-phosphate hydrolase -
  P3T90_RS03835 (P3T90_03830) - 869559..870503 (+) 945 WP_323694447.1 carbohydrate kinase -
  P3T90_RS03840 (P3T90_03835) agrA 870563..871279 (-) 717 WP_037542586.1 quorum-sensing response regulator AgrA Regulator
  P3T90_RS03845 (P3T90_03840) agrC 871293..872585 (-) 1293 WP_096636795.1 quorum-sensing sensor histidine kinase AgrC -
  P3T90_RS03850 (P3T90_03845) agrD 872608..872745 (-) 138 WP_019166405.1 cyclic lactone autoinducer peptide AgrD -
  P3T90_RS03855 (P3T90_03850) - 872747..873313 (-) 567 WP_096636794.1 accessory gene regulator AgrB -
  P3T90_RS12270 - 873705..873782 (+) 78 WP_126511050.1 delta-lysin family phenol-soluble modulin -
  P3T90_RS03860 (P3T90_03855) - 874070..874873 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28003.09 Da        Isoelectric Point: 5.0893

>NTDB_id=803492 P3T90_RS03840 WP_037542586.1 870563..871279(-) (agrA) [Staphylococcus pseudintermedius strain Dog040]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=803492 P3T90_RS03840 WP_037542586.1 870563..871279(-) (agrA) [Staphylococcus pseudintermedius strain Dog040]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGTGAACGCATGGTGTCCATTATTGAAAATTATATTATGATTGA
AGAGAAACCGATGGAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAGCTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.613

100

0.836