Detailed information NTG0803482

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: RJ561_RS01860
• Genome accession: NZ_CP134393
• Coordinates: 387485..388831 (+)
• Length: 448 a.a.
• NCBI ID: WP_033122536.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ICDC15003-50-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 382485..393831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJ561_RS01830 (RJ561_01830)	-	382640..383470 (+)	831	WP_310958093.1	beta-1,4-N-acetylgalactosamyltransferase	-
RJ561_RS01835 (RJ561_01835)	-	383486..384037 (-)	552	WP_180398346.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
RJ561_RS01840 (RJ561_01840)	-	384183..384644 (+)	462	WP_001874089.1	helix-turn-helix domain-containing protein	-
RJ561_RS01845 (RJ561_01845)	-	384818..385981 (+)	1164	WP_310957817.1	NifS family cysteine desulfurase	-
RJ561_RS01850 (RJ561_01850)	-	386003..386983 (+)	981	WP_220878553.1	iron-sulfur cluster assembly scaffold protein	-
RJ561_RS01855 (RJ561_01855)	-	387139..387372 (+)	234	WP_000415833.1	ribbon-helix-helix domain-containing protein	-
RJ561_RS01860 (RJ561_01860)	radA	387485..388831 (+)	1347	WP_033122536.1	DNA repair protein RadA	Machinery gene
RJ561_RS01865 (RJ561_01865)	msrB	388955..390034 (+)	1080	WP_310957818.1	peptide-methionine (R)-S-oxide reductase MsrB	-
RJ561_RS01870 (RJ561_01870)	-	390405..391205 (-)	801	WP_310957819.1	sulfite exporter TauE/SafE family protein	-
RJ561_RS01875 (RJ561_01875)	hopM	391449..393530 (-)	2082	WP_310957820.1	Hop family outer membrane protein HopM/HopN	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49482.42 Da
• Isoelectric Point: 8.0235

>NTDB_id=803482 RJ561_RS01860 WP_033122536.1 387485..388831(+) (radA) [Helicobacter pylori strain ICDC15003-50-2]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLNTLKNPLPKAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRNIAVFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=803482 RJ561_RS01860 WP_033122536.1 387485..388831(+) (radA) [Helicobacter pylori strain ICDC15003-50-2]
TTGGCTAAAAAAACTTCCTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGCTGGGCAAGTGCGTTCAATG
CAACGCATGGGAGAGTTTTATAGAATTGAATCAAACCCAAAAGGAAGTTTTAAACACGCTTAAAAACCCTCTCCCAAAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAGCATGAAGAAGTGATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTGGGTGGGGGGATTGCTAAAGGAGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATTGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCTATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCGCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAACTCATGCGTTTAGCCAAAACAAGAAATATTGCTGTTTTTATCATCG
GTCATATCACTAAAGAAGGGAGTATTGCAGGGCCTAGAGTGCTAGAGCATATGGTGGATAGCGTGCTGTATTTTGAAGGC
GATCCTAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATTGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAAGCTTCAAGCCTGTTTTTTTCCAAAGAAGAGCCTATGGAGGGGAGTGCCA
TTACCATCACTTTAGAAGGCTCAAGAGCGTTGATTTTAGAAATCCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCACCC
AAACGATTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTTATTGCTTTATTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCTAAAAAACC
CAGTCAAAAAACCTCTATCAAATGTTATGAAGCCAATGCGGTAGGCAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (62-220)

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	46.714	95.089	0.444
radA	Streptococcus pneumoniae Rx1	46.714	95.089	0.444
radA	Streptococcus pneumoniae D39	46.714	95.089	0.444
radA	Streptococcus pneumoniae TIGR4	46.714	95.089	0.444
radA	Streptococcus mitis SK321	46.714	95.089	0.444
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.604	95.313	0.444
radA	Streptococcus mitis NCTC 12261	46.479	95.089	0.442