Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6438_RS09995 Genome accession   NZ_AP022975
Coordinates   1949419..1949706 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus cereus strain 30040     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944419..1954706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6438_RS09975 (BC30040_1898) - 1945593..1945790 (+) 198 WP_062921548.1 DUF4083 domain-containing protein -
  L6438_RS09980 (BC30040_1899) - 1945822..1946283 (+) 462 WP_000035009.1 NUDIX hydrolase -
  L6438_RS09985 (BC30040_1900) nadE 1946332..1947150 (-) 819 WP_062921549.1 ammonia-dependent NAD(+) synthetase -
  L6438_RS09990 (BC30040_1901) - 1947422..1949302 (+) 1881 WP_236788246.1 ABC transporter permease -
  L6438_RS09995 (BC30040_1902) abrB 1949419..1949706 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6438_RS10000 (BC30040_1903) - 1949981..1950931 (+) 951 WP_001089035.1 serine protease -
  L6438_RS10005 (BC30040_1904) - 1950972..1951280 (-) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  L6438_RS10010 (BC30040_1905) - 1951388..1952323 (+) 936 WP_062921551.1 aldo/keto reductase -
  L6438_RS10015 (BC30040_1906) - 1952372..1953547 (+) 1176 WP_062921552.1 MFS transporter -
  L6438_RS10020 (BC30040_1907) - 1953737..1953961 (-) 225 WP_000162606.1 hypothetical protein -
  L6438_RS10025 (BC30040_1908) - 1954046..1954393 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=80346 L6438_RS09995 WP_000648330.1 1949419..1949706(+) (abrB) [Bacillus cereus strain 30040]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=80346 L6438_RS09995 WP_000648330.1 1949419..1949706(+) (abrB) [Bacillus cereus strain 30040]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment