Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RJ643_RS17715 Genome accession   NZ_CP134389
Coordinates   3685669..3686274 (-) Length   201 a.a.
NCBI ID   WP_001195026.1    Uniprot ID   A0A2T3RX43
Organism   Escherichia coli strain TUM10828     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3680669..3691274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ643_RS17695 (RJ643_17695) aes 3680810..3681769 (+) 960 WP_000801694.1 acetyl esterase -
  RJ643_RS17700 (RJ643_17700) hemH 3681766..3682728 (-) 963 WP_001250117.1 ferrochelatase -
  RJ643_RS17705 (RJ643_17705) adk 3682860..3683504 (-) 645 WP_001220233.1 adenylate kinase -
  RJ643_RS17710 (RJ643_17710) htpG 3683685..3685559 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  RJ643_RS17715 (RJ643_17715) recR 3685669..3686274 (-) 606 WP_001195026.1 recombination mediator RecR Machinery gene
  RJ643_RS17720 (RJ643_17720) ybaB 3686274..3686603 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  RJ643_RS17725 (RJ643_17725) dnaX 3686656..3688587 (-) 1932 WP_000121995.1 DNA polymerase III subunit gamma/tau -
  RJ643_RS17730 (RJ643_17730) apt 3688716..3689267 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  RJ643_RS17735 (RJ643_17735) ybaN 3689420..3689797 (-) 378 WP_001188905.1 DUF454 family protein -
  RJ643_RS17740 (RJ643_17740) priC 3689867..3690394 (+) 528 WP_000844858.1 primosomal replication protein N'' -
  RJ643_RS17745 (RJ643_17745) rsmS 3690408..3690572 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21904.96 Da        Isoelectric Point: 5.0698

>NTDB_id=803439 RJ643_RS17715 WP_001195026.1 3685669..3686274(-) (recR) [Escherichia coli strain TUM10828]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=803439 RJ643_RS17715 WP_001195026.1 3685669..3686274(-) (recR) [Escherichia coli strain TUM10828]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTACCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGGCGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RX43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.729

99.005

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.005

0.448