Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OO842_RS18255 Genome accession   NZ_AP026108
Coordinates   3600920..3601435 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain CEC13091     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3595920..3606435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO842_RS18230 (CEC13091_34970) ygaZ 3596319..3597056 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  OO842_RS18235 (CEC13091_34980) ygaH 3597046..3597381 (+) 336 WP_000119747.1 L-valine transporter subunit YgaH -
  OO842_RS18240 (CEC13091_34990) emrR 3597472..3598002 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  OO842_RS18245 (CEC13091_35000) emrA 3598129..3599301 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  OO842_RS18250 (CEC13091_35010) emrB 3599318..3600856 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  OO842_RS18255 (CEC13091_35020) luxS 3600920..3601435 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  OO842_RS18260 (CEC13091_35030) gshA 3601585..3603141 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  OO842_RS18265 (CEC13091_35040) yqaA 3603214..3603642 (-) 429 WP_001287450.1 YqaA family protein -
  OO842_RS18270 (CEC13091_35050) yqaB 3603639..3604205 (-) 567 WP_000273311.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  OO842_RS18300 (CEC13091_35060) csrA 3605433..3605618 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=80338 OO842_RS18255 WP_001130215.1 3600920..3601435(-) (luxS) [Escherichia coli strain CEC13091]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=80338 OO842_RS18255 WP_001130215.1 3600920..3601435(-) (luxS) [Escherichia coli strain CEC13091]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment