Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   P3U26_RS00260 Genome accession   NZ_CP120129
Coordinates   57136..58764 (-) Length   542 a.a.
NCBI ID   WP_323708602.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain Dog048     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 52136..63764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U26_RS00235 (P3U26_00235) - 52254..52964 (-) 711 WP_323708597.1 hypothetical protein -
  P3U26_RS00240 (P3U26_00240) - 52994..55243 (-) 2250 WP_323708598.1 Ig-like domain-containing protein -
  P3U26_RS00245 (P3U26_00245) - 55384..55896 (-) 513 WP_323708599.1 DUF1643 domain-containing protein -
  P3U26_RS00250 (P3U26_00250) - 55916..56227 (-) 312 WP_323708600.1 DUF960 family protein -
  P3U26_RS00255 (P3U26_00255) - 56312..56662 (-) 351 WP_323708601.1 SAUGI family uracil-DNA glycosylase inhibitor -
  P3U26_RS00260 (P3U26_00260) ccrB 57136..58764 (-) 1629 WP_323708602.1 cassette chromosome recombinase CcrB Machinery gene
  P3U26_RS00265 (P3U26_00265) ccrA 58786..60135 (-) 1350 WP_323708603.1 cassette chromosome recombinase CcrA Machinery gene
  P3U26_RS00270 (P3U26_00270) - 60314..60604 (-) 291 WP_064211002.1 hypothetical protein -
  P3U26_RS00275 (P3U26_00275) cch1 60694..62481 (-) 1788 WP_323708604.1 cassette chromosome replicative helicase -
  P3U26_RS00280 (P3U26_00280) ssb 62481..62729 (-) 249 WP_323708605.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62257.48 Da        Isoelectric Point: 9.9895

>NTDB_id=803312 P3U26_RS00260 WP_323708602.1 57136..58764(-) (ccrB) [Mammaliicoccus sciuri strain Dog048]
MNKMKRKSIGLYVRVSTLAQDIDGFSINAQITQLKEYCSFQGYKVVDVYADRGISGKSMNRPELQRMLKDSKEGKLDCVM
VYKTSRLARNTSDLLSIVEGLHRQNVEFFSLSENMKFDSNSGKLLLQILASFSEFERNNIAEGAFMGQLRRSQEGYYQGN
LPLAYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAITYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQDLWDKVQARKKQVSKKPQVHGKGTNLLTGIISCPNCSAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVSALNHDMAYKQQQFD
EIQAKLNNLVKTIEDNPDLMSVLKETIHQYETQLNEIANQINQLKRQQNKEKPSYDTKQITVLLRRIFQNIETMDKAQLK
ALYLTVIDRINIRKDGNHKKQFYVTLKLNNEIIKQLFNDNPIDEVLLSTSSLFLPQTLYIQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=803312 P3U26_RS00260 WP_323708602.1 57136..58764(-) (ccrB) [Mammaliicoccus sciuri strain Dog048]
ATGAATAAAATGAAAAGAAAGTCTATAGGTTTATATGTTAGGGTATCGACGTTAGCACAAGATATTGATGGCTTCAGTAT
AAATGCACAAATTACACAATTAAAGGAATATTGCAGTTTCCAAGGATACAAAGTTGTAGATGTTTACGCTGACCGAGGTA
TTTCAGGAAAATCGATGAATCGTCCTGAACTCCAGCGTATGTTGAAGGATTCTAAAGAGGGCAAATTAGATTGTGTTATG
GTTTACAAAACCAGTCGTTTAGCTCGTAACACATCCGACTTATTATCGATTGTTGAAGGATTACACAGACAAAATGTTGA
ATTCTTTAGTTTGTCTGAAAATATGAAATTCGATTCAAATAGTGGGAAATTACTCTTACAAATTTTAGCTTCCTTCTCAG
AATTTGAAAGGAATAACATCGCCGAAGGAGCATTTATGGGGCAGTTGAGAAGGTCTCAAGAAGGCTATTATCAAGGCAAT
TTACCGCTCGCTTACGATAAGATACCAGATAATAAACATGAACTCATGATTAATCAACATGAAGCCAACATTGTGAAATA
TATCTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATTGCCAATGCACTCAACCATAAAGGTTATGTCACTAAGA
AAGGTAATCCATTTAGCATTTCTGCTATTACTTATATTCTCTCAAATCCATTCTATATTGGAAAAATTCAATTCGCGAAA
TACAAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAGCCGGTAATCGCTGAAGGTAAACACACGCCTATTAT
TAGTCAAGATTTATGGGATAAAGTACAAGCACGTAAGAAGCAAGTAAGCAAAAAACCACAAGTTCATGGTAAAGGGACAA
ATCTGTTAACGGGAATAATTTCGTGTCCAAATTGTTCTGCCCCTATGGCCGCAAGTAATACTACAAACACACTCAAAGAC
GGAACTAAGAAACGTATTCGCTATTACTCATGTAGTAATTTTCGTAATAAAGGCTCGAAAGTATGTTCAGCTAATAGCGT
AAGAGCAGATGTAATAGAAAAGTATGTTATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAGTTCTCAAGCAAGTTG
TCGAACGCGTCAATCAAGAAAATCAAGTCGATGTATCTGCACTTAATCATGACATGGCATACAAGCAACAACAATTTGAT
GAAATACAAGCTAAATTAAATAATTTGGTTAAAACTATTGAAGATAATCCAGACTTAATGTCCGTACTCAAAGAAACCAT
ACACCAATATGAAACTCAACTAAATGAAATTGCAAACCAAATTAACCAACTGAAACGCCAACAAAATAAAGAGAAACCAT
CTTATGATACTAAACAAATAACTGTACTATTACGTCGTATATTTCAAAATATAGAGACTATGGATAAAGCCCAGCTCAAA
GCATTATATCTTACAGTCATTGACCGTATTAATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTAACGCTGAA
ACTCAATAATGAAATTATTAAACAACTCTTCAATGATAACCCAATCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTACATTCAAATCTAG

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)

Resolvase, N terminal domain (Resolvase)

(11-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

79.151

100

0.792