Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   RJ648_RS21985 Genome accession   NZ_CP134380
Coordinates   4581625..4583454 (-) Length   609 a.a.
NCBI ID   WP_001461810.1    Uniprot ID   A7ZU29
Organism   Escherichia coli strain TUM11353     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4576625..4588454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ648_RS21960 (RJ648_21965) bioP 4577343..4578242 (-) 900 WP_001196238.1 biotin transporter -
  RJ648_RS21965 (RJ648_21970) yigL 4578318..4579118 (-) 801 WP_311042509.1 sugar/pyridoxal phosphate phosphatase YigL -
  RJ648_RS21970 (RJ648_21975) pldB 4579126..4580148 (-) 1023 WP_000487654.1 lysophospholipase L2 -
  RJ648_RS21975 (RJ648_21980) rhtB 4580259..4580879 (+) 621 WP_000171710.1 homoserine/homoserine lactone efflux protein -
  RJ648_RS21980 (RJ648_21985) rhtC 4580941..4581561 (-) 621 WP_000928824.1 threonine export protein RhtC -
  RJ648_RS21985 (RJ648_21990) recQ 4581625..4583454 (-) 1830 WP_001461810.1 ATP-dependent DNA helicase RecQ Machinery gene
  RJ648_RS21990 (RJ648_21995) pldA 4583587..4584456 (-) 870 WP_001259700.1 phospholipase A -
  RJ648_RS21995 (RJ648_22000) yigI 4584621..4585088 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  RJ648_RS22000 (RJ648_22005) rarD 4585140..4586027 (+) 888 WP_000339103.1 EamA family transporter RarD -
  RJ648_RS22005 (RJ648_22010) - 4586074..4586373 (-) 300 WP_000526434.1 hypothetical protein -
  RJ648_RS22010 (RJ648_22015) - 4586997..4587143 (-) 147 Protein_4293 CorA family divalent cation transporter -
  RJ648_RS22015 (RJ648_22020) - 4587330..4588178 (+) 849 WP_113708277.1 YPO3983 family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68337.48 Da        Isoelectric Point: 7.0847

>NTDB_id=803290 RJ648_RS21985 WP_001461810.1 4581625..4583454(-) (recQ) [Escherichia coli strain TUM11353]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQINSFDRPNIRYMLMEKFKPLDQLMRYVQEQCGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=803290 RJ648_RS21985 WP_001461810.1 4581625..4583454(-) (recQ) [Escherichia coli strain TUM11353]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACCGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAACAGCAACTTGAAGT
GATGACAGGCTGCCGCACCGGGCAAATTCGTCTGCTTTATATCGCCCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGGTTCCCGACGCTGCCGTTTATGGCGCTGACCGCCACAGCCGACGACAC
CACGCGCCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAACAGTTTTGACCGTCCGAATATTC
GCTACATGCTGATGGAGAAGTTCAAACCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGTGCGGTAAGTCCGGCATT
ATCTACTGCAACAGCCGGGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGTATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAAAATAATGTCCGCGCCGACGTGCAGGAGAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCCGATATGGCGTG
GCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAACGTCATAAACTCAATGCGATGGGCGCTT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTACTGCTGAACTATTTTGGCGAAGGGCGTCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAGTACGACGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGTTTTGGTATGGGCTATGTGGTGGAAGTGATTCGCGGCGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTAAAAGTCTACGGTATGGGCCGTGATAAAAGTCATGAACATTGGGTGAGCGTGATCCGCCAGTTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTCCAACTGACAGAGGCCGCGCGTCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGTAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGTGTTGGGATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAG

Domains

Predicted by InterProScan.

RQC domain (RQC)

(406-514)

HRDC domain (HRDC)

(533-599)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

DEAD/DEAH box helicase (DEAD)

(28-187)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZU29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.034

97.209

0.389