Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RJ644_RS01995 Genome accession   NZ_CP134376
Coordinates   424184..424651 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain TUM12355     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419184..429651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ644_RS01970 (RJ644_01970) rpsG 419325..419795 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  RJ644_RS01975 (RJ644_01975) fusA 419892..422006 (+) 2115 WP_000124700.1 elongation factor G -
  RJ644_RS01980 (RJ644_01980) tuf 422077..423261 (+) 1185 WP_000031783.1 elongation factor Tu -
  RJ644_RS01985 (RJ644_01985) bfd 423444..423638 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RJ644_RS01990 (RJ644_01990) bfr 423711..424187 (+) 477 WP_000675515.1 bacterioferritin -
  RJ644_RS01995 (RJ644_01995) pilD 424184..424651 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  RJ644_RS02000 (RJ644_02000) rpsJ 425030..425341 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  RJ644_RS02005 (RJ644_02005) rplC 425374..426003 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  RJ644_RS02010 (RJ644_02010) rplD 426014..426619 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  RJ644_RS02015 (RJ644_02015) rplW 426616..426918 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  RJ644_RS02020 (RJ644_02020) rplB 426936..427757 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  RJ644_RS02025 (RJ644_02025) rpsS 427774..428052 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  RJ644_RS02030 (RJ644_02030) rplV 428067..428399 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  RJ644_RS02035 (RJ644_02035) rpsC 428417..429118 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  RJ644_RS02040 (RJ644_02040) rplP 429131..429541 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=803151 RJ644_RS01995 WP_000340171.1 424184..424651(-) (pilD) [Escherichia coli strain TUM12355]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=803151 RJ644_RS01995 WP_000340171.1 424184..424651(-) (pilD) [Escherichia coli strain TUM12355]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361