Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   P3T86_RS04750 Genome accession   NZ_CP120099
Coordinates   1041111..1041827 (-) Length   238 a.a.
NCBI ID   WP_119488137.1    Uniprot ID   -
Organism   Staphylococcus nepalensis strain Dog109     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036111..1046827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T86_RS04730 (P3T86_04730) - 1036822..1037046 (+) 225 WP_096808848.1 sulfurtransferase TusA family protein -
  P3T86_RS04735 (P3T86_04735) - 1037418..1038380 (+) 963 WP_096808849.1 LacI family DNA-binding transcriptional regulator -
  P3T86_RS04740 (P3T86_04740) - 1038459..1039940 (+) 1482 WP_096808850.1 sucrose-6-phosphate hydrolase -
  P3T86_RS04745 (P3T86_04745) - 1039941..1040906 (+) 966 WP_119488136.1 carbohydrate kinase family protein -
  P3T86_RS04750 (P3T86_04750) agrA 1041111..1041827 (-) 717 WP_119488137.1 quorum-sensing response regulator AgrA Regulator
  P3T86_RS04755 (P3T86_04755) agrC 1041840..1043135 (-) 1296 WP_210133616.1 quorum-sensing sensor histidine kinase AgrC -
  P3T86_RS04760 (P3T86_04760) agrD 1043166..1043303 (-) 138 WP_107644464.1 cyclic lactone autoinducer peptide AgrD -
  P3T86_RS04765 (P3T86_04765) - 1043306..1043875 (-) 570 WP_096808855.1 accessory gene regulator AgrB -
  P3T86_RS04770 (P3T86_04770) - 1044622..1045407 (-) 786 WP_103373159.1 carbon-nitrogen family hydrolase -
  P3T86_RS04775 (P3T86_04775) - 1045567..1046196 (-) 630 WP_096808857.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27979.72 Da        Isoelectric Point: 4.8072

>NTDB_id=802930 P3T86_RS04750 WP_119488137.1 1041111..1041827(-) (agrA) [Staphylococcus nepalensis strain Dog109]
MKIFICEDDERQRENLVSIINNYIMIEEKPMEIEVATSDPYEVLEHAKELKDIGCYFLDIQLEADINGIKLASEIRKYDP
VSNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSETRLKLLSKESTVETIELKRGSNSVYVQYDDVM
FFESSSNSHRLIAHLDNRQIEFYGNLKEIDNLDERFFRCHNSFVINRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=802930 P3T86_RS04750 WP_119488137.1 1041111..1041827(-) (agrA) [Staphylococcus nepalensis strain Dog109]
ATGAAAATATTCATTTGTGAAGATGATGAGAGACAACGTGAAAATTTGGTTTCTATTATCAATAATTACATCATGATAGA
AGAAAAACCGATGGAAATTGAAGTAGCAACCTCTGATCCTTATGAGGTATTGGAACATGCAAAGGAACTTAAAGATATCG
GTTGTTACTTTCTAGACATACAATTAGAAGCTGATATTAATGGTATTAAATTAGCGAGCGAAATCCGAAAATATGATCCA
GTCAGTAATATCATTTTCGTCACTAGTCATAGTGAACTGACCTATCTGACATTTGTTTATAAAGTTGCGGCTATGGATTT
TATTTTCAAGGATGATCCTGATGAATTGAAATCAAGAGTTATTGATTGTCTTGAAACTTCTGAAACACGATTGAAATTAC
TTTCTAAAGAAAGTACTGTAGAAACAATTGAATTAAAACGTGGAAGCAATTCTGTTTATGTACAATACGATGATGTAATG
TTCTTTGAGTCTTCCTCTAATTCTCATCGTTTAATTGCTCATTTAGATAATAGACAAATTGAATTCTATGGTAACTTGAA
AGAAATCGACAATTTAGATGAACGCTTTTTCAGATGCCATAATAGTTTCGTTATTAACAGGCACAATATTGAATCTATTG
ATTCTAAATCACGTATTGTTTACTTTAAAAATAACGAACACTGCTACGCTTCCGTACGTAATGTAAAAAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.034

100

0.84