Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RJ646_RS14840 Genome accession   NZ_CP134358
Coordinates   3061284..3061913 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TUM13936     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3056284..3066913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ646_RS14825 (RJ646_14825) helD 3056526..3058580 (-) 2055 WP_000420536.1 DNA helicase IV -
  RJ646_RS14830 (RJ646_14830) yccF 3058703..3059149 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RJ646_RS14835 (RJ646_14835) yccS 3059159..3061321 (+) 2163 WP_310983914.1 YccS family putative transporter -
  RJ646_RS14840 (RJ646_14840) sxy/tfoX 3061284..3061913 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RJ646_RS14845 (RJ646_14845) sulA 3062131..3062640 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RJ646_RS14850 (RJ646_14850) ompA 3062997..3064052 (+) 1056 WP_225571255.1 porin OmpA -
  RJ646_RS14855 (RJ646_14855) matP 3064128..3064580 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RJ646_RS14860 (RJ646_14860) ycbZ 3064766..3066526 (+) 1761 WP_310983915.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=802853 RJ646_RS14840 WP_000839153.1 3061284..3061913(-) (sxy/tfoX) [Escherichia coli strain TUM13936]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=802853 RJ646_RS14840 WP_000839153.1 3061284..3061913(-) (sxy/tfoX) [Escherichia coli strain TUM13936]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1