Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   P3U69_RS04535 Genome accession   NZ_CP120083
Coordinates   929532..930248 (-) Length   238 a.a.
NCBI ID   WP_053017492.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain Dog117_H     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 924532..935248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U69_RS04515 (P3U69_04515) - 924574..925818 (+) 1245 WP_053019358.1 ammonium transporter -
  P3U69_RS04520 (P3U69_04520) - 925918..926877 (+) 960 WP_037569556.1 LacI family DNA-binding transcriptional regulator -
  P3U69_RS04525 (P3U69_04525) - 926962..928446 (+) 1485 WP_053017490.1 sucrose-6-phosphate hydrolase -
  P3U69_RS04530 (P3U69_04530) - 928450..929415 (+) 966 WP_037569564.1 carbohydrate kinase family protein -
  P3U69_RS04535 (P3U69_04535) agrA 929532..930248 (-) 717 WP_053017492.1 quorum-sensing response regulator AgrA Regulator
  P3U69_RS04540 (P3U69_04540) agrC 930267..931550 (-) 1284 WP_033079905.1 quorum-sensing sensor histidine kinase AgrC -
  P3U69_RS04545 (P3U69_04545) agrD 931577..931717 (-) 141 WP_033079904.1 cyclic lactone autoinducer peptide AgrD -
  P3U69_RS04550 (P3U69_04550) - 931720..932286 (-) 567 WP_053019357.1 accessory gene regulator AgrB -
  P3U69_RS04555 (P3U69_04555) - 933052..933837 (-) 786 WP_053019356.1 carbon-nitrogen family hydrolase -
  P3U69_RS04560 (P3U69_04560) - 934030..934653 (-) 624 WP_011275306.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27790.72 Da        Isoelectric Point: 5.4063

>NTDB_id=802709 P3U69_RS04535 WP_053017492.1 929532..930248(-) (agrA) [Staphylococcus haemolyticus strain Dog117_H]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDNPYEVIEKSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDSSQLQSRIIDCLETAHTRLKLLSKESTVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVNFKNGEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=802709 P3U69_RS04535 WP_053017492.1 929532..930248(-) (agrA) [Staphylococcus haemolyticus strain Dog117_H]
ATGAAAATATTCATTTGTGAAGATGATGTAAAACAACGCGAAAATATGGTTTCAATTATTAATAATTACATTATGATTGA
AGAAAAACCTATGGAGATTGCGCTTGCAACAGACAATCCTTATGAAGTCATTGAAAAATCTAAAGAGATGAATGATGTCG
GATGTTACTTTCTAGATATTCAATTAGAGGCTGATATCAACGGTATTAAATTAGGTAGTGAAATTCGTAAGTATGACCCA
ATTGGGAATATCATATTCGTTACAAGTCATAGTGAGTTAACGTACCTAACCTTTGTTTACAAAGTGTCAGCGATGGATTT
TATCTTTAAAGATGATTCAAGCCAATTACAGTCCAGAATTATTGATTGCTTAGAAACTGCACATACCCGCTTAAAATTAT
TATCTAAAGAAAGTACTGTTGAGACGATTGAATTGAAACGAGGAAGTAATTCAATTTATGTTCAATATGATGACGTAATG
TTTTTCGAATCATCTACAAAATCACATCGGTTAATCGCACATTTAGATAATCGTCAAATTGAGTTCTATGGCAATTTAAA
AGAACTTGCACAACTTGATGAGCGGTTCTTTAGATGTCACAACAGCTTCGTTGTTAATAGACATAATATTGAATCCATAG
ATTCAAAAGAACGTATTGTCAATTTTAAAAACGGTGAGCACTGTTTTGCTTCCGTTCGTAATGTTAAAAAAATATAG

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878