Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   P3U69_RS00340 Genome accession   NZ_CP120083
Coordinates   70801..72426 (-) Length   541 a.a.
NCBI ID   WP_048667848.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain Dog117_H     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65801..77426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U69_RS00320 (P3U69_00320) - 66078..67394 (+) 1317 WP_058646714.1 ISL3-like element ISSha1 family transposase -
  P3U69_RS00325 (P3U69_00325) - 67448..68629 (-) 1182 WP_048667851.1 NupC/NupG family nucleoside CNT transporter -
  P3U69_RS00330 (P3U69_00330) - 68640..69551 (-) 912 WP_048667850.1 pseudouridine-5'-phosphate glycosidase -
  P3U69_RS00335 (P3U69_00335) - 69535..70644 (-) 1110 WP_048667849.1 carbohydrate kinase -
  P3U69_RS00340 (P3U69_00340) ccrB 70801..72426 (-) 1626 WP_048667848.1 cassette chromosome recombinase CcrB Machinery gene
  P3U69_RS00345 (P3U69_00345) ccrA 72423..73784 (-) 1362 WP_048667847.1 cassette chromosome recombinase CcrA Machinery gene
  P3U69_RS00350 (P3U69_00350) - 74039..75331 (+) 1293 WP_048667846.1 NtaA/DmoA family FMN-dependent monooxygenase -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62272.61 Da        Isoelectric Point: 9.7442

>NTDB_id=802700 P3U69_RS00340 WP_048667848.1 70801..72426(-) (ccrB) [Staphylococcus haemolyticus strain Dog117_H]
MKQLKKKHIGLYARVSTETQKNGYSIQGQLNQLTEYCQFQGYEVVDEYTDRGISGKTMERPELQRMLKDANDGKLDCIMV
YKTNRLARNTSDLLNIVEKLYKINVEFFSLTEKIEIASSTGKLMLQILASFAEFERNTIIENVYNGQRQRAIEGYYQGNL
PLGYDKVPDSKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKAKPFSISSITYIISNPFYIGKIQFAKY
RHWSDKKRKGLNEEPIIADGKHAPIIDKALRDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPKCGAAMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQILEIIKSKKVLKQLVEKVNERSQIDVSSLNHDIAYKQSQCEE
IKAKMHTLTKTIEDSPDLDSVLKPTILSYQDELNQINNQIHQLEQDKQAESPHYDADMIANVLQAIFKDIDKLEKSQLKS
LYLTIIDRIDIRKDEHHKKQFYVTLKLNNEIIKQLFNNHPLDEVLLSTSSLFLSQTLYLII

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=802700 P3U69_RS00340 WP_048667848.1 70801..72426(-) (ccrB) [Staphylococcus haemolyticus strain Dog117_H]
ATGAAACAACTTAAAAAGAAACATATTGGATTATATGCCCGTGTATCGACTGAAACTCAAAAAAATGGTTACAGTATTCA
AGGTCAATTAAACCAACTTACAGAGTATTGTCAATTTCAAGGTTATGAGGTCGTTGATGAATATACCGATCGTGGTATAT
CGGGTAAAACAATGGAACGTCCAGAATTACAACGTATGTTAAAAGATGCAAATGACGGTAAGTTAGACTGTATTATGGTC
TACAAAACCAATCGTTTAGCTAGAAATACCTCAGACTTATTAAATATTGTGGAAAAATTGTATAAAATCAATGTCGAATT
TTTTAGTCTAACTGAAAAAATAGAAATTGCCAGCTCAACAGGTAAATTGATGCTCCAAATTTTAGCCAGCTTCGCAGAAT
TTGAAAGAAATACGATTATAGAAAACGTTTATAACGGTCAAAGACAACGAGCGATTGAAGGTTATTACCAAGGTAATTTA
CCTTTAGGCTATGATAAAGTACCTGACAGTAAAAAAGAGCTCATGATCAATCAACATGAAGCGAATATTGTTAAATATAT
TTTTGAGTCATACGCTAAAGGTCATGGTTATCGTAAGATTGCGAACGCATTGAATCATAAAGGTTATGTGACTAAGAAAG
CGAAACCTTTTAGCATTTCGTCCATTACTTACATCATCTCAAACCCTTTTTACATTGGAAAGATACAGTTTGCGAAGTAT
AGACACTGGAGCGATAAAAAACGAAAAGGACTCAATGAAGAACCAATCATTGCAGATGGTAAGCATGCGCCTATTATTGA
TAAAGCTTTACGGGATAAAGTACAGTTTAAACGCCAAGAGAGTCGCAAGAAACCACAAGTTCACGGTAAAGGGACTAACC
TACTGACTGGCATTGTAAAATGTCCGAAATGTGGTGCAGCAATGGCCGCAAGTAATACGACCAATACATTAAAAGATGGC
ACTAAGAAAAGAATCAGATATTACTCATGTAGTAATTTTAGAAACAAAGGTTCAAAAGTTTGTTCAGCCAATAGTGTTAG
AGCAGATGTACTAGAAAAATATGTTATGGATCAGATATTGGAAATTATCAAAAGCAAAAAGGTATTGAAGCAATTGGTTG
AAAAGGTAAATGAAAGAAGTCAAATAGACGTATCTTCTTTGAATCATGATATTGCCTATAAACAGTCACAATGTGAAGAA
ATAAAAGCCAAAATGCATACACTAACGAAAACTATCGAAGACTCCCCTGACTTAGATAGCGTATTGAAACCAACAATACT
TAGCTACCAAGATGAATTGAATCAAATAAATAATCAAATCCATCAACTAGAACAAGATAAACAAGCGGAATCTCCACATT
ATGATGCAGATATGATTGCTAATGTATTACAAGCAATATTCAAAGATATAGACAAATTAGAGAAATCTCAGTTGAAATCA
CTATATCTAACAATCATCGATCGTATTGACATAAGAAAAGATGAGCATCATAAGAAGCAATTTTACGTTACGCTCAAACT
GAATAATGAGATTATCAAACAACTATTTAATAACCATCCACTTGACGAAGTGCTTCTTAGCACTTCGTCTTTATTTTTGT
CCCAAACACTGTATCTTATTATTTAG

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-154)

Recombinase (Recombinase)

(179-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

71.771

100

0.719