Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RI578_RS13960 Genome accession   NZ_CP134203
Coordinates   3051369..3052352 (-) Length   327 a.a.
NCBI ID   WP_310871389.1    Uniprot ID   -
Organism   Streptomyces sp. BB1-1-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046369..3057352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS13940 (RI578_13940) - 3046482..3047510 (+) 1029 WP_310871386.1 intradiol ring-cleavage dioxygenase -
  RI578_RS13945 (RI578_13945) - 3047661..3047855 (-) 195 WP_121749054.1 hypothetical protein -
  RI578_RS13950 (RI578_13950) - 3048054..3050168 (+) 2115 WP_310871387.1 prolyl oligopeptidase family serine peptidase -
  RI578_RS13955 (RI578_13955) - 3050297..3051376 (-) 1080 WP_310871388.1 dipeptide ABC transporter ATP-binding protein -
  RI578_RS13960 (RI578_13960) amiE 3051369..3052352 (-) 984 WP_310871389.1 ABC transporter ATP-binding protein Regulator
  RI578_RS13965 (RI578_13965) - 3052361..3053350 (-) 990 WP_310871390.1 ABC transporter permease -
  RI578_RS13970 (RI578_13970) - 3053343..3054266 (-) 924 WP_310871391.1 ABC transporter permease -
  RI578_RS13975 (RI578_13975) - 3054276..3055901 (-) 1626 WP_310871392.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35971.73 Da        Isoelectric Point: 6.5001

>NTDB_id=802665 RI578_RS13960 WP_310871389.1 3051369..3052352(-) (amiE) [Streptomyces sp. BB1-1-1]
MLLEVRDLHVEFHTRDGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTVMGILDMPPGRITAGEVLFEGRDLLKLKE
EERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMFTVHRGMSRKDAHAKAVELMDRVRIPAAKERVRQYPHQFSGGMRQ
RIMIAMAMALEPKLIIADEPTTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD
IYKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIPPGCAFHPRCPMAQDVCRTDVPPLYDVTESEAERGSACHF
WRECLHG

Nucleotide


Download         Length: 984 bp        

>NTDB_id=802665 RI578_RS13960 WP_310871389.1 3051369..3052352(-) (amiE) [Streptomyces sp. BB1-1-1]
ATGCTGCTGGAAGTGCGCGACCTGCACGTGGAGTTCCACACCCGGGACGGCGTCGCCAAGGCCGTCAACGGCGTCAGCTA
CGGCGTCGACGCGGGCGAGACCCTGGCCGTCCTCGGCGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGACGGTCATGG
GCATCCTCGACATGCCCCCGGGCCGGATCACCGCCGGCGAGGTCCTCTTCGAGGGCCGGGACCTGCTGAAGCTGAAGGAG
GAGGAACGCCGGAAGGTCCGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCGTCGTTGAACCCCGTCCTCAC
CGTCGGCGCCCAGCTCGCCGAGATGTTCACCGTGCACCGCGGCATGTCGCGCAAGGACGCCCATGCCAAGGCCGTCGAGC
TGATGGACCGCGTCCGCATCCCGGCCGCCAAGGAGCGGGTGCGGCAGTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCGATGGCGATGGCCCTGGAGCCGAAGCTGATCATCGCCGACGAGCCGACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTGCTCGCGGAACTCCAGCGCGAGCTGCACATGGGCCTGATCCTCATCACCCACGACC
TGGGCGTGGTCGCCGACGTGGCCGACAAGATCGCCGTCATGTACGCGGGCCGGATCGTGGAGACGGCGCCCGTCCACGAC
ATCTACAAGGCGCCCGCCCACCCCTACACCCGCGGCCTGCTCGAGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
CTACGCCATCAAGGGCCTGCCGCCCAACCTCACCCGCATCCCGCCCGGCTGCGCCTTCCACCCCCGCTGCCCGATGGCCC
AGGACGTCTGCCGCACCGACGTACCGCCGCTGTACGACGTGACGGAGTCCGAAGCGGAACGCGGGAGCGCCTGCCACTTC
TGGAGGGAGTGCCTGCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.875

97.859

0.459
  amiE Streptococcus thermophilus LMG 18311

46.25

97.859

0.453
  amiE Streptococcus thermophilus LMD-9

46.25

97.859

0.453
  oppD Streptococcus mutans UA159

47.896

94.495

0.453