Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RI578_RS11140 Genome accession   NZ_CP134203
Coordinates   2431849..2432550 (-) Length   233 a.a.
NCBI ID   WP_310870950.1    Uniprot ID   -
Organism   Streptomyces sp. BB1-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2426849..2437550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS11135 (RI578_11135) - 2428887..2431799 (+) 2913 WP_310870949.1 glycoside hydrolase family 3 C-terminal domain-containing protein -
  RI578_RS11140 (RI578_11140) vraR 2431849..2432550 (-) 702 WP_310870950.1 response regulator transcription factor Regulator
  RI578_RS11145 (RI578_11145) - 2432556..2433788 (-) 1233 WP_310870951.1 histidine kinase -
  RI578_RS11150 (RI578_11150) - 2433931..2435058 (+) 1128 WP_310870952.1 glycosyltransferase 87 family protein -
  RI578_RS11155 (RI578_11155) - 2435055..2436245 (+) 1191 WP_310870953.1 glycosyltransferase family 4 protein -
  RI578_RS11160 (RI578_11160) - 2436242..2437099 (-) 858 WP_310870954.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 25133.76 Da        Isoelectric Point: 5.6280

>NTDB_id=802655 RI578_RS11140 WP_310870950.1 2431849..2432550(-) (vraR) [Streptomyces sp. BB1-1-1]
MEREKETHVIRALVADDQAVVRTGFVNLLGTQEDIEVVGEAEDGVQAVRIAGETRPDLALLDIRMPHMNGIEAAREILAA
SGGATKVLMLTTFGLDEYVYDALAAGAGGFLLKDATFPELLHAVRVVADGNALLSPEITKRLIAEFVHARASRLPVHSAD
DLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIAAYELGLVRAGGESGARRR

Nucleotide


Download         Length: 702 bp        

>NTDB_id=802655 RI578_RS11140 WP_310870950.1 2431849..2432550(-) (vraR) [Streptomyces sp. BB1-1-1]
ATGGAGCGGGAGAAGGAGACACACGTGATCAGGGCACTGGTCGCCGACGACCAGGCGGTCGTACGCACCGGCTTCGTGAA
CCTGCTGGGCACCCAGGAGGACATCGAGGTCGTCGGCGAGGCCGAGGACGGTGTACAGGCCGTGCGGATCGCCGGTGAGA
CCCGGCCCGACCTCGCACTCCTCGACATCCGGATGCCGCACATGAACGGAATCGAGGCGGCCCGCGAGATCCTGGCCGCG
TCCGGCGGCGCGACGAAGGTCCTGATGCTGACGACCTTCGGGCTCGACGAGTACGTGTACGACGCGCTCGCGGCCGGGGC
GGGCGGCTTCCTGCTCAAGGACGCCACCTTTCCCGAACTGCTGCACGCGGTCCGGGTGGTGGCGGACGGCAACGCCCTGC
TCTCGCCCGAGATCACCAAGCGGCTGATCGCCGAGTTCGTCCACGCGCGCGCGTCACGGCTGCCCGTCCACTCGGCGGAC
GACCTCACGGCTCGGGAGACGGAGGTGCTGACCCTGATCGCGCGTGGCCTGTCCAACGCGGAGATCGCGGGCCGCCTCAC
CATCACCGATCACACGGTGAAGACCCACATCAACCGGCTGTTCGCCAAGCTGGAACTGCGCGACCGGGCCCAAGCCGTGA
TCGCCGCCTACGAGCTGGGCCTGGTCCGGGCGGGGGGCGAGTCGGGGGCCCGGCGCCGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-215)

Response regulator receiver domain (Response_reg)

(13-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.121

91.845

0.378