Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RG879_RS05560 Genome accession   NZ_CP134202
Coordinates   1065922..1066884 (-) Length   320 a.a.
NCBI ID   WP_000735588.1    Uniprot ID   Q8DZT7
Organism   Streptococcus agalactiae strain Alim_agalac_1000     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1060922..1071884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG879_RS05540 dprA 1062123..1062965 (-) 843 WP_001015250.1 DNA-processing protein DprA Machinery gene
  RG879_RS05545 - 1063103..1064131 (-) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  RG879_RS05550 - 1064193..1064954 (-) 762 WP_000614752.1 ABC transporter ATP-binding protein -
  RG879_RS05555 - 1064951..1065925 (-) 975 WP_058143201.1 iron chelate uptake ABC transporter family permease subunit -
  RG879_RS05560 ceuB 1065922..1066884 (-) 963 WP_000735588.1 ABC transporter permease Machinery gene
  RG879_RS05565 - 1067122..1067670 (-) 549 WP_000136506.1 sugar O-acetyltransferase -
  RG879_RS05570 - 1067691..1068452 (-) 762 WP_000201088.1 ribonuclease HII -
  RG879_RS05575 ylqF 1068439..1069290 (-) 852 WP_000201281.1 ribosome biogenesis GTPase YlqF -
  RG879_RS05580 - 1069566..1070138 (-) 573 WP_001231800.1 L,D-transpeptidase -
  RG879_RS05585 - 1070339..1071823 (-) 1485 WP_000256021.1 carbon starvation protein A -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34880.98 Da        Isoelectric Point: 8.4842

>NTDB_id=802592 RG879_RS05560 WP_000735588.1 1065922..1066884(-) (ceuB) [Streptococcus agalactiae strain Alim_agalac_1000]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLTSRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGVAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISITKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=802592 RG879_RS05560 WP_000735588.1 1065922..1066884(-) (ceuB) [Streptococcus agalactiae strain Alim_agalac_1000]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTGAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAACGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTAACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATAGCTTCAGGTTTTGCCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTATATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AGAATTTAGGGGTTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCATAACTAAAGGAGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTAGGTAGTGCCTTTTTCCTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.649

99.688

0.475