Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RG879_RS01825 Genome accession   NZ_CP134202
Coordinates   307006..307740 (+) Length   244 a.a.
NCBI ID   WP_029140698.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain Alim_agalac_1000     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 302006..312740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG879_RS01810 - 302928..304358 (+) 1431 WP_001217283.1 helix-turn-helix domain-containing protein -
  RG879_RS01815 recP/tkt 304483..306468 (+) 1986 WP_000141866.1 transketolase Machinery gene
  RG879_RS01820 - 306681..306986 (+) 306 WP_000711207.1 bacteriocin immunity protein -
  RG879_RS01825 pptA 307006..307740 (+) 735 WP_029140698.1 ABC transporter ATP-binding protein Regulator
  RG879_RS01830 - 307744..309348 (+) 1605 WP_001104587.1 ABC transporter permease -
  RG879_RS01835 - 309556..310941 (-) 1386 WP_001865878.1 PTS transporter subunit EIIC -
  RG879_RS01840 proB 311082..311885 (+) 804 WP_000820352.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27521.73 Da        Isoelectric Point: 4.7523

>NTDB_id=802552 RG879_RS01825 WP_029140698.1 307006..307740(+) (pptA) [Streptococcus agalactiae strain Alim_agalac_1000]
MIKFEHVSKVYGEKEALSDLTLSVKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMKYLDKDLETIYLELAGRQA
SREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=802552 RG879_RS01825 WP_029140698.1 307006..307740(+) (pptA) [Streptococcus agalactiae strain Alim_agalac_1000]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGAGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTGTTAAAGATGG
TGAGATTTTTGGATTAATAGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTAAATTTAACCGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGACGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCCCTTCTTCCAAATCCTGACATTTGGATTCTAGATGAGCCGTTA
ACTGGTTTAGACCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTCTTAGCAGTTGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGAAATATCTAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AGTAGGGAGGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.683

99.59

0.385
  pptA Streptococcus salivarius strain HSISS4

38.272

99.59

0.381